Browse Element(s) Details


Os.18645.1.S1_at

Description gb:AK108229.1
DB_XREF= gi:32993438
TID=Os.18645.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F12, full insert sequence.
FL= gb:AK108229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1310010/11WW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13080Os.39476.1.S1_at7/1112+7262472..7264668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13090OsAffx.19638.1.S1_at11/1112+7274170..7274674hypothetical protein
LOC_Os12g13100Os.18645.1.S1_at10/1112+7283434..7284983WW domain containing protein, expressed
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18645.1.S1_at--291--8071Chr12:7284394..7284418 (25 bp)
GGAGCTCAACATCTCGACTACCCAG
LOC_Os12g13100
Os.18645.1.S1_at--105--7211NONE
GTCGTCCCCATCATTATCGATGGAG
NONE
Os.18645.1.S1_at--542--5311Chr12:7284514..7284538 (25 bp)
GAAGGGTGGCACCATCGTCAGCTCT
LOC_Os12g13100
Os.18645.1.S1_at--47--9411Chr12:7284528..7284552 (25 bp)
TCGTCAGCTCTGGACCTGGAGGCAA
LOC_Os12g13100
Os.18645.1.S1_at--88--7731Chr12:7284556..7284580 (25 bp)
GGTGGCCGTGCCTTGTGTCAATTGC
LOC_Os12g13100
Os.18645.1.S1_at--26--2671Chr12:7284692..7284716 (25 bp)
AAGCCGCTGGAGACCTTGAGCCTTC
LOC_Os12g13100
Os.18645.1.S1_at--542--10451Chr12:7284707..7284731 (25 bp)
TTGAGCCTTCTCCATTAGGGCAGTC
LOC_Os12g13100
Os.18645.1.S1_at--470--3591Chr12:7284719..7284743 (25 bp)
CATTAGGGCAGTCTAGCTAGCAGTT
LOC_Os12g13100
Os.18645.1.S1_at--492--1571Chr12:7284733..7284757 (25 bp)
AGCTAGCAGTTGGTGCTTGCTTGCT
LOC_Os12g13100
Os.18645.1.S1_at--304--9991Chr12:7284814..7284838 (25 bp)
TAGCACGTGGGCAATTAGTACTGTT
LOC_Os12g13100
Os.18645.1.S1_at--162--391Chr12:7284856..7284880 (25 bp)
ATCACTATGTTAATCCAGGGACTTT
LOC_Os12g13100
Target Sequence 
GGAGCTCAACATCTCGACTACCCAGCCAACCGTCGTCGTCGTCCCCATCATTATCGATGGAGGAAGCACCGGANGCTGCT
GCTACTCCNAGTTGCTGTTGCTGTTGTTGCAGAGGAGACAAAGAAGGGTGGCACCATCGTCAGCTCTGGACCTGGAGGCA
ACATGGTGGCCGTGCCTTGTGTCAATTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCCCCATCCNTGTCCCAACTGCAA
GTTCGNGCAGCCGTTGGCGCCACCGCCGCCGGCCCTGCCGCACCGCAAGCTCGACGCCGTCAAGCCGCTGGAGACCTTGA
GCCTTCTCCATTAGGGCAGTCTAGCTAGCAGTTGGTGCTTGCTTGCTTGCATGCATGCCCCCGTGCTCAAAGGGCAGGTG
GCTGTAGAAAGAAAAAACCCTAGTAGCACGTGGGCAATTAGTACTGTTTGAGGGAAGGACTATTGATCACTATGTTAATC
CAGGGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis