Browse Element(s) Details


Os.18671.1.S1_at

Description gb:AK102978.1
DB_XREF= gi:32988187
TID=Os.18671.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115N17, full insert sequence.
FL= gb:AK102978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1179011/11TLD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18671.1.S1_at--87--7431Chr06:6243549..6243573 (25 bp)
GTGTTCACCAATATAGCTGGCCGTC
LOC_Os06g11790
Os.18671.1.S1_at--1135--8411Chr06:6243531..6243555 (25 bp)
GGCCGTCCTGTTATATATCGTCCAA
LOC_Os06g11790
Os.18671.1.S1_at--207--7511Chr06:6243351..6243375 (25 bp)
GTGGTCACTTTGCACTTTATCTTGA
LOC_Os06g11790
Os.18671.1.S1_at--866--5971Chr06:6243159..6243183 (25 bp)
GAGACATTTAACAACCCGTGCTTAT
LOC_Os06g11790
Os.18671.1.S1_at--876--4731Chr06:6243140..6243164 (25 bp)
GCTTATCACGTTCCCGGGAGTTTGA
LOC_Os06g11790
Os.18671.1.S1_at--911--8291Chr06:6243006..6243030 (25 bp)
GGCTTCGTCAATGCTTCCAAGTATG
LOC_Os06g11790
Os.18671.1.S1_at--263--6311Chr06:6242982..6243006 (25 bp)
GATGAGATGCTCACTATCTGCCGTA
LOC_Os06g11790
Os.18671.1.S1_at--387--6411Chr06:6242944..6242968 (25 bp)
GATCTGGAATCTGTGACTGTCTGTT
LOC_Os06g11790
Os.18671.1.S1_at--936--6811Chr06:6242902..6242926 (25 bp)
GTTTAGTGCTTGTACCTGATGCCAA
LOC_Os06g11790
Os.18671.1.S1_at--1038--871Chr06:6242821..6242845 (25 bp)
AGGCCTTGTTGGAGTTCTGTCTGTA
LOC_Os06g11790
Os.18671.1.S1_at--252--6991Chr06:6242682..6242706 (25 bp)
GTACCGTACCATAGCTTCCTGAAGA
LOC_Os06g11790
Target Sequence 
GTGTTCACCAATATAGCTGGCCGTCCTGTTATATATCGTCCAACAGGTGCTAATAACTATTTCACATTTTGCTCCACCGA
TTATTTGGCAATGGGAGGTGGTGGTCACTTTGCACTTTATCTTGATGGAGACCTTCTGAATGGTTCAAGTTCCACTTCAG
AGACATTTAACAACCCGTGCTTATCACGTTCCCGGGAGTTTGAAGTCAAAGATGTCGAGCTATGGGGCTTCGTCAATGCT
TCCAAGTATGATGAGATGCTCACTATCTGCCGTACTGAGAAGCAAGGGATCTGGAATCTGTGACTGTCTGTTTACANATT
GATCTGAGCTGTTTAGTGCTTGTACCTGATGCCAACCCATCCTGGTGGTTTGTACAGTTTTGTAGTTCTGTCTGTTAAGT
ATAGTATATATAGGCCTTGTTGGAGTTCTGTCTGTATGTATAGTAAAATGCCCCTTGTAAAACAAGTTCATCAACGGAGT
TATGGAGCTTAAAATGAGTAACTCTGAAACATGAATCGAGCANCTGCCAAAGCTGATCCTTGTAAATATTGTACCGTACC
ATAGCTTCCTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis