Browse Element(s) Details


Os.18680.1.S1_at

Description gb:AK071125.1
DB_XREF= gi:32981148
TID=Os.18680.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082K03, full insert sequence.
FL= gb:AK071125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5586011/11Peptidyl-tRNA hydrolase 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55820NANA4+33013372..33019528retrotransposon protein, putative, unclassified
LOC_Os04g55830NANA4+33020145..33023408retrotransposon protein, putative, unclassified
LOC_Os04g55840Os.55099.1.S1_at11/114+33026126..33032184expressed protein
LOC_Os04g55850Os.26483.1.S1_at11/114+33034849..33037531S1/P1 Nuclease family protein, expressed
LOC_Os04g55860Os.18680.1.S1_at11/114+33039613..33042124Peptidyl-tRNA hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os04g55870NANA4+33049114..33052341transposon protein, putative, unclassified
LOC_Os04g55879NANA4+33052982..33059751retrotransposon protein, putative, unclassified
LOC_Os04g55890OsAffx.22947.1.S1_x_at11/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.2.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.3.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.5.S1_x_at2/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18680.1.S1_at--284--4431Chr04:33040937..33040961 (25 bp)
GCCATGCAACGTTGGGTCTGTTTAA
LOC_Os04g55860
Os.18680.1.S1_at--581--8191Chr04:33040163..33040184 (22 bp)
GGAAGAACACAGATCGCACCAAATT
LOC_Os04g55860
Os.18680.1.S1_at--609--10211Chr04:33039945..33040053 (25 bp)
TATTCTTGGGCCAGCTGACATGGTC
LOC_Os04g55860
Os.18680.1.S1_at--162--9671Chr04:33039913..33039937 (25 bp)
TCACCGGTGGTCTGAAGCTTCTATA
LOC_Os04g55860
Os.18680.1.S1_at--330--2231Chr04:33039889..33039913 (25 bp)
AAATTCTTGTTCTCGGTATCCTCAG
LOC_Os04g55860
Os.18680.1.S1_at--107--5631Chr04:33039832..33039856 (25 bp)
GACAAACCACATTGGCTGCTGAAGA
LOC_Os04g55860
Os.18680.1.S1_at--352--5451Chr04:33039809..33039833 (25 bp)
GAACGAACCCTGAAACTCATCGGCT
LOC_Os04g55860
Os.18680.1.S1_at--827--491Chr04:33039791..33039815 (25 bp)
ATCGGCTCACTCAATCTTGTTGTTC
LOC_Os04g55860
Os.18680.1.S1_at--780--3871Chr04:33039719..33039743 (25 bp)
CTGTCTTCGGAGCAATGGTTTTTTC
LOC_Os04g55860
Os.18680.1.S1_at--345--10371Chr04:33039699..33039723 (25 bp)
TTTTCTTTCTTCAGTTTTCCACTCT
LOC_Os04g55860
Os.18680.1.S1_at--650--10711Chr04:33039667..33039691 (25 bp)
TTGCTGTGGACGTCTGAACTCTTAA
LOC_Os04g55860
Target Sequence 
GCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAA
GTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAAC
ACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACA
TGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACA
AACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCG
AGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAG
TTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis