Browse Element(s) Details


Os.18717.2.S1_at

Description gb:AK102152.1
DB_XREF= gi:32987361
TID=Os.18717.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-160-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086D22, full insert sequence.
FL= gb:AK102152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2818011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28110Os.10060.1.S1_at11/119+17061565..17066526hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g28120Os.48051.1.S1_at11/119+17070782..17073107F-box domain containing protein, expressed
LOC_Os09g28130OsAffx.6424.1.S1_at11/119+17074189..17074708dioscorin A, putative, expressed
LOC_Os09g28140NANA9+17075443..17075769retrotransposon protein, putative, unclassified
LOC_Os09g28150Os.49643.1.S1_at11/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28150Os.54455.1.S1_at1/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28190OsAffx.6425.1.S1_at11/119+17105645..17106890hypothetical protein
LOC_Os09g28200OsAffx.17944.1.S1_at11/119+17108293..17110076HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18717.2.S1_at--981--1951Chr09:17091524..17091548 (25 bp)
ACTGTACAATTGTCCGCAGTGCCGA
LOC_Os09g28180
Os.18717.2.S1_at--561--3171Chr09:17091517..17091541 (25 bp)
AATTGTCCGCAGTGCCGACGTGGCA
LOC_Os09g28180
Os.18717.2.S1_at--560--7531Chr09:17091498..17091522 (25 bp)
GTGGCAGTACACCTGTCCATTATAG
LOC_Os09g28180
Os.18717.2.S1_at--817--5251Chr09:17091474..17091498 (25 bp)
GAATCCATGGAACCGATTAACCTGA
LOC_Os09g28180
Os.18717.2.S1_at--560--91Chr09:17091459..17091483 (25 bp)
ATTAACCTGACGTAATACTCCCTGG
LOC_Os09g28180
Os.18717.2.S1_at--1127--311Chr09:17091445..17091469 (25 bp)
ATACTCCCTGGACGATAATCTGCAA
LOC_Os09g28180
Os.18717.2.S1_at--169--5191Chr09:17091424..17091448 (25 bp)
GCAATGCTGCATACTTTCGTCGGTT
LOC_Os09g28180
Os.18717.2.S1_at--225--3811Chr09:17091398..17091422 (25 bp)
CTCCCGTGGTTATATGCTTGGCAGT
LOC_Os09g28180
Os.18717.2.S1_at--521--8271Chr09:17091379..17091403 (25 bp)
GGCAGTATCTGCAGTTCTTCATCTG
LOC_Os09g28180
Os.18717.2.S1_at--224--2431Chr09:17091340..17091364 (25 bp)
AAAACTGATCCATGAGGTGTGGACA
LOC_Os09g28180
Os.18717.2.S1_at--153--9191Chr09:17091270..17091294 (25 bp)
TGCCAACTTGTCCATGTACTAGAGC
LOC_Os09g28180
Target Sequence 
ACTGTACAATTGTCCGCAGTGCCGACGTGGCAGTACACCTGTCCATTATAGAATCCATGGAACCGATTAACCTGACGTAA
TACTCCCTGGACGATAATCTGCAATGCTGCATACTTTCGTCGGTTCCTCCCGTGGTTATATGCTTGGCAGTATCTGCAGT
TCTTCATCTGATAAAGAAGAAGAGAAAACTGATCCATGAGGTGTGGACAGGTTNGAAAAACACAAAAGAATGGCTGCCAT
AGATTAAAAGAACTATGCCAACTTGTCCATGTACTAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18717.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis