Browse Element(s) Details


Os.18740.1.S1_at

Description gb:AK059363.1
DB_XREF= gi:32969381
TID=Os.18740.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E03, full insert sequence.
FL= gb:AK099203.1 gb:AK059363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5655010/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18740.1.S1_at--471--7591Chr02:34634629..34634653 (25 bp)
GGGCTACTGACATTGCATACATCCA
LOC_Os02g56550
Os.18740.1.S1_at--948--1331Chr02:34634704..34634728 (25 bp)
AGAGTGCCAAAAACTTGCTGTCAGT
LOC_Os02g56550
Os.18740.1.S1_at--105--9131Chr02:34634719..34634743 (25 bp)
TGCTGTCAGTTGTCGAGTCATGGCT
LOC_Os02g56550
Os.18740.1.S1_at--88--1171Chr02:34634734..34634758 (25 bp)
AGTCATGGCTGCGATCTGAGACCAA
LOC_Os02g56550
Os.18740.1.S1_at--461--191Chr02:34634813..34634837 (25 bp)
ATTTGATGCTTCACCGTTCCGATCT
LOC_Os02g56550
Os.18740.1.S1_at--883--2111Chr02:34634845..34634869 (25 bp)
ACATGGCCTACTACCGTTGATGATT
LOC_Os02g56550
Os.18740.1.S1_at--557--9951Chr02:34634985..34635009 (25 bp)
TACCCTTGTGCCGATGAGCAGTGAG
LOC_Os02g56550
Os.18740.1.S1_at--874--5931Chr02:34635000..34635024 (25 bp)
GAGCAGTGAGTACCCATCAAGTTCA
LOC_Os02g56550
Os.18740.1.S1_at--268--9911Chr02:34635052..34635076 (25 bp)
TACTACATGAATTCAGTCCCTGTCA
LOC_Os02g56550
Os.18740.1.S1_at--32--2311Chr02:34635106..34635130 (25 bp)
AAATGGCCCCATTTATCACGAGAAA
LOC_Os02g56550
Os.18740.1.S1_at--1054--8491NONE
TGGCAACTTCACTGCTCGTATGAAT
NONE
Target Sequence 
GGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGCTAAAGAGT
GCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACCAAACTCCCTAAGAAAGAACATCCCCGTCCTGA
GACCCAGCCCAGGCNCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGAT
TGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTTTCTCNTCCCTTTC
TACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTNC
TGTACTTCTTTCTGATAATCTAATACTACATGAATTCAGTCCCTGTCATTNTTTAGAAAGGCTTGATGTACATTAAGAAA
TGGCCCCATTTATCACGAGAAAGTAATGTGTACCTGTCTTCTNAAGTACTGGCAACTTCACTGCTCGTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis