Browse Element(s) Details


Os.18757.1.S1_at

Description gb:AK100622.1
DB_XREF= gi:32985831
TID=Os.18757.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108G08, full insert sequence.
FL= gb:AK100622.1 gb:AK060635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4181011/11protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41790Os.7361.1.S1_s_at11/115+24381048..24386108Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g41800Os.7148.1.A1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41800OsAffx.15062.1.S1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41810Os.18757.2.S1_x_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41810Os.18757.1.S1_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41820OsAffx.15063.1.S1_s_at11/115+24409253..24409946expressed protein
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18757.1.S1_at--276--7491Chr05:24401076..24401100 (25 bp)
GTGGGAGCACAATACCTCATCTGAA
LOC_Os05g41810
Os.18757.1.S1_at--1074--8991Chr05:24401055..24401079 (25 bp)
TGAATTTCAGCATCCCCTGTAAATC
LOC_Os05g41810
Os.18757.1.S1_at--1153--5571Chr05:24401029..24401050 (22 bp)
GAAATGGTCTTCAAGTACTCAGCAA
LOC_Os05g41810
Os.18757.1.S1_at--154--8531Chr05:24400875..24400899 (25 bp)
TGGACAAACCCAATGAAGTGCTCTC
LOC_Os05g41810
Os.18757.1.S1_at--34--9011Chr05:24400862..24400886 (25 bp)
TGAAGTGCTCTCATCCGTATGGGCA
LOC_Os05g41810
Os.18757.1.S1_at--1063--10311Chr05:24400815..24400839 (25 bp)
TTTTCAGTACCTCCCCAGAAAATGG
LOC_Os05g41810
Os.18757.1.S1_at--146--1231Chr05:24400778..24400802 (25 bp)
AGTTCTGGAGTTCTCAAAGTTTCTT
LOC_Os05g41810
Os.18757.1.S1_at--872--8271Chr05:24400712..24400736 (25 bp)
GGCATTCCTTAGAGACAGGATTCCC
LOC_Os05g41810
Os.18757.1.S1_at--222--8931Chr05:24400614..24400638 (25 bp)
TGAAAACCTGGTTCAGATTACCCCT
LOC_Os05g41810
Os.18757.1.S1_at--790--11Chr05:24400598..24400622 (25 bp)
ATTACCCCTTCCAAACTGTTAGCTG
LOC_Os05g41810
Os.18757.1.S1_at--127--10791Chr05:24400540..24400564 (25 bp)
TTGTAACGTTGAAGCCATCTCCAGG
LOC_Os05g41810
Target Sequence 
GTGGGAGCACAATACCTCATCTGAATTTCAGCATCCCCTGTAAATCTTTGGAAATGGTCTTCAAGTACTCAGCAAAAGGA
NANTTCAAAATTTTGGAGCAGTTGGACAAACCCAATGAAGTGCTCTCATCCGTATGGGCACTGGCACCAACATCATCCCC
TTTTTTCAGTACCTCCCCAGAAAATGGTAGAGGGGNAAAAGTTCTGGAGTTCTCAAAGTTTCTTGCTGATAAACAAGAAG
GTTTGAAATCTATAAAAGATATAGAGGCATTCCTTAGAGACAGGATTCCCAGCAAAATTTAGATGGGAATGTTTCGCAAA
GCACAGGTATAGAGGTCCGGTGGTTACTTCATTGGGTATATGCTGAAAACCTGGTTCAGATTACCCCTTCCAAACTGTTA
GCTGCATACACCATTTTGAAACATNTAAATTGACAAATTGTAACGTTGAAGCCATCTCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis