Browse Element(s) Details


Os.7148.1.A1_at

Description gb:C99502
DB_XREF= gi:3762254
DB_XREF=C99502
CLONE=E20262_6Z
TID=Os.7148.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7148 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199241.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4180011/11Ribosomal protein L11 methyltransferase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41790Os.7361.1.S1_s_at11/115+24381048..24386108Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g41800Os.7148.1.A1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41800OsAffx.15062.1.S1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41810Os.18757.2.S1_x_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41810Os.18757.1.S1_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41820OsAffx.15063.1.S1_s_at11/115+24409253..24409946expressed protein
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7148.1.A1_at--1039--2951Chr05:24395249..24395273 (25 bp)
AATGGCACAAGTTCTCCTTCAGTAT
LOC_Os05g41800
Os.7148.1.A1_at--852--8871Chr05:24395299..24395323 (25 bp)
TGATGGCATGCAGGGATCATCCGAT
LOC_Os05g41800
Os.7148.1.A1_at--777--6431Chr05:24395313..24395337 (25 bp)
GATCATCCGATGAAAGCCTGTACAA
LOC_Os05g41800
Os.7148.1.A1_at--44--5251Chr05:24395367..24395391 (25 bp)
GAATCAGCAAACTTAGCTCTTCCTT
LOC_Os05g41800
Os.7148.1.A1_at--975--10451Chr05:24395379..24395403 (25 bp)
TTAGCTCTTCCTTAGTTGTGACTCG
LOC_Os05g41800
Os.7148.1.A1_at--198--6631Chr05:24395393..24395417 (25 bp)
GTTGTGACTCGTTAAATTTGCTCTT
LOC_Os05g41800
Os.7148.1.A1_at--365--211Chr05:24395408..24395432 (25 bp)
ATTTGCTCTTGGTCTTCTGATATAG
LOC_Os05g41800
Os.7148.1.A1_at--138--8451Chr05:24395508..24395532 (25 bp)
GGCCAAACATATAGTCTGGTGACTG
LOC_Os05g41800
Os.7148.1.A1_at--844--6511Chr05:24395541..24395565 (25 bp)
GATATTGGTGTTGCCTGTCCAACTT
LOC_Os05g41800
Os.7148.1.A1_at--763--4471Chr05:24395553..24395577 (25 bp)
GCCTGTCCAACTTGAACTGATTTTT
LOC_Os05g41800
Os.7148.1.A1_at--506--6531Chr05:24395595..24395619 (25 bp)
GATTTAACTTGGTAGCTCGATTCCC
LOC_Os05g41800
Target Sequence 
AATGGCACAAGTTCTCCTTCAGTATCAATCTGATCAAATAGCGGGGAATATGATGGCATGCAGGGATCATCCGATGAAAG
CCTGTACAAAGTTATCCAGTATAGAAAAAGAAAAAAGAGAATCAGCAAACTTAGCTCTTCCTTAGTTGTGACTCGTTAAA
TTTGCTCTTGGTCTTCTGATATAGTACATGGTTCATTCATTTAAATTGGAGGAATTGAAATGCATGGGTGGATGGAATTA
AGTAGCAGTCGTAAAAGAAGGCCAAACATATAGTCTGGTGACTGCTCGTTGTGATATTGGTGTTGCCTGTCCAACTTGAA
CTGATTTTTAAATGGAGATATCAACTGATTTAACTTGGTAGCTCGATTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7148.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis