Browse Element(s) Details


OsAffx.15063.1.S1_s_at

Description tigr:9633.m03923
TID=OsAffx.15063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4182011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41790Os.7361.1.S1_s_at11/115+24381048..24386108Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g41800Os.7148.1.A1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41800OsAffx.15062.1.S1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41810Os.18757.2.S1_x_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41810Os.18757.1.S1_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41820OsAffx.15063.1.S1_s_at11/115+24409253..24409946expressed protein
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15063.1.S1_s_at--118--4551Chr05:24409529..24409553 (25 bp)
GCCCTCGTCTGGTGGTGCTGAAGTA
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--359--3791Chr05:24409526..24409550 (25 bp)
CTCGTCTGGTGGTGCTGAAGTACTG
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--530--7311Chr05:24409515..24409539 (25 bp)
GTGCTGAAGTACTGGTGATCGACCT
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--107--1191Chr05:24409508..24409532 (25 bp)
AGTACTGGTGATCGACCTACGTGGC
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--583--7391Chr05:24409501..24409525 (25 bp)
GTGATCGACCTACGTGGCCACGTTT
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--1094--4391Chr05:24409485..24409509 (25 bp)
GCCACGTTTCGTGCGGCAGAGTAAT
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--238--6811Chr05:24409480..24409504 (25 bp)
GTTTCGTGCGGCAGAGTAATTTTTT
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--530--8191Chr05:24409452..24409476 (25 bp)
GGAAGGCGATTGAACCCTTAGAGCA
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--592--6591Chr05:24409445..24409469 (25 bp)
GATTGAACCCTTAGAGCAACCGCAA
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--695--5431Chr05:24409441..24409465 (25 bp)
GAACCCTTAGAGCAACCGCAATGAT
LOC_Os05g41820
OsAffx.15063.1.S1_s_at--847--4171Chr05:24409438..24409462 (25 bp)
CCCTTAGAGCAACCGCAATGATTAT
LOC_Os05g41820
Target Sequence 
GCCCTCGTCTGGTGGTGCTGAAGTACTGGTGATCGACCTACGTGGCCACGTTTCGTGCGGCAGAGTAATTTTTTTTAGGA
AGGCGATTGAACCCTTAGAGCAACCGCAATGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15063.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis