Browse Element(s) Details


OsAffx.4592.1.S1_at

Description tigr:9633.m03925
TID=OsAffx.4592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4184011/11hypothetical protein
LOC_Os05g418301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41800Os.7148.1.A1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41800OsAffx.15062.1.S1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41810Os.18757.2.S1_x_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41810Os.18757.1.S1_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41820OsAffx.15063.1.S1_s_at11/115+24409253..24409946expressed protein
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified
LOC_Os05g41870Os.55122.1.S1_at10/115+24435620..24436534expressed protein
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4592.1.S1_at--985--4471Chr05:24421739..24421763 (25 bp)
GCCGTTCTCCGGGAAGACGAGACGA
LOC_Os05g41840
OsAffx.4592.1.S1_at--323--5632Chr05:24421606..24421630 (25 bp)
GACACGGTGTGCCATCAACCAAAAG
LOC_Os05g41840
OsAffx.4592.1.S1_at--201--8391Chr05:24421544..24421568 (25 bp)
GGCGACGACGGTCATGCCATCTTCG
LOC_Os05g41840
OsAffx.4592.1.S1_at--699--8291Chr05:24421421..24421445 (25 bp)
GGCTACGCCGCTGGTATGTACACAG
LOC_Os05g41840
OsAffx.4592.1.S1_at--527--8591Chr05:24421410..24421434 (25 bp)
TGGTATGTACACAGGCGGCGGCACT
LOC_Os05g41840
OsAffx.4592.1.S1_at--149--4811Chr05:24421384..24421408 (25 bp)
GCTCGGCGAAGGCTGACATCATAAT
LOC_Os05g41840
OsAffx.4592.1.S1_at--95--431Chr05:24421367..24421391 (25 bp)
ATCATAATCGATGTCCTCCTTGTCC
LOC_Os05g41840
OsAffx.4592.1.S1_at--524--3811Chr05:24421352..24421376 (25 bp)
CTCCTTGTCCTCACTTTGGTAGGAG
LOC_Os05g41840
OsAffx.4592.1.S1_at--491--6931Chr05:24421334..24421358 (25 bp)
GTAGGAGGAATCATCACGATCGTGT
LOC_Os05g41840
OsAffx.4592.1.S1_at--81--1891Chr05:24421319..24421343 (25 bp)
ACGATCGTGTGGAGTTTTTGCTTCA
LOC_Os05g41840
OsAffx.4592.1.S1_at--1102--371Chr05:24421285..24421309 (25 bp)
ATCAACAGGCGGACAGTGGTAGTAC
LOC_Os05g41840
Target Sequence 
GCCGTTCTCCGGGAAGACGAGACGACGACGACGGCCACGGATGGCCTCGCCTGCAGGCATCGTCGTCGTGCCAGCGCCGT
CGTCGTCACTGCAGCAGCCGCGCCGCCCCTCGTCCCCGTGCACGCCGCCGCCGGACACGGTGTGCCATCAACCAAAAGCT
TCAACGAGGGCCCCGCACCTTCGACGACCGGCGGCGGCGACGACGGTCATGCCATCTTCGCCGCCGCCGCCGCCGCCGGG
CGTGTCAGCTCACGCCTCGGCGGTGGCGGCGTCGGCGGCCGCGGCGGCGGTGGCTATGGTCGTGCGGGTGGTGGTGCCGG
CTACGCCGCTGGTATGTACACAGGCGGCGGCACTGGCTCGGCGAAGGCTGACATCATAATCGATGTCCTCCTTGTCCTCA
CTTTGGTAGGAGGAATCATCACGATCGTGTGGAGTTTTTGCTTCATCTGTACTAATCAACAGGCGGACAGTGGTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis