Browse Element(s) Details


Os.18757.2.S1_x_at

Description gb:CB630276
DB_XREF= gi:29625265
DB_XREF=OSIIEb07C06.f
CLONE=OSIIEb07C06
TID=Os.18757.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108G08, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4181011/11protease, putative, expressed
LOC_Os12g414303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41790Os.7361.1.S1_s_at11/115+24381048..24386108Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g41800Os.7148.1.A1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41800OsAffx.15062.1.S1_at11/115+24390009..24399649Ribosomal protein L11 methyltransferase containing protein, expressed
LOC_Os05g41810Os.18757.2.S1_x_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41810Os.18757.1.S1_at11/115+24400478..24405837protease, putative, expressed
LOC_Os05g41820OsAffx.15063.1.S1_s_at11/115+24409253..24409946expressed protein
LOC_Os05g41830Os.46785.2.S1_x_at5/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.4592.1.S1_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.442.1.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41830OsAffx.30226.2.S1_x_at1/115+24413291..24418509retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g41840OsAffx.4592.1.S1_at11/115+24421248..24421871hypothetical protein
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18757.2.S1_x_at--769--6731Chr05:24405251..24405275 (25 bp)
GTTCTTGGTCGAGGAGCAGCGCAAT
LOC_Os05g41810
Os.18757.2.S1_x_at--846--6152Chr12:25631798..25631822 (25 bp)
GAGGTTGGTACCAGAGGCTCATCTT
LOC_Os12g41430
Os.18757.2.S1_x_at--859--912Chr12:25631784..25631808 (25 bp)
AGGCTCATCTTGATGTGCTCGTTGA
LOC_Os12g41430
Os.18757.2.S1_x_at--970--3672Chr12:25631555..25631579 (25 bp)
CTTTCAGCTCGATTACTTGCCATAG
LOC_Os12g41430
Os.18757.2.S1_x_at--693--6651Chr05:24403958..24403982 (25 bp)
GTTGATGTCCAAGCATCTGCTGATT
LOC_Os05g41810
Os.18757.2.S1_x_at--818--6571Chr05:24403937..24403961 (25 bp)
GATTCTGTATTATCCTTACTGCAAC
LOC_Os05g41810
Os.18757.2.S1_x_at--334--10551Chr05:24403890..24403914 (25 bp)
TTCATCGTGGGATGTCTGCTGGTCA
LOC_Os05g41810
Os.18757.2.S1_x_at--45--9491Chr05:24403876..24403900 (25 bp)
TCTGCTGGTCATTGGCTGATGTCAA
LOC_Os05g41810
Os.18757.2.S1_x_at--827--6351Chr05:24403755..24403779 (25 bp)
GATGCCAGATATTCCCTTGAGTGTA
LOC_Os05g41810
Os.18757.2.S1_x_at--952--2991Chr05:24403693..24403717 (25 bp)
AATGTTGGCCAAGTCTGCCACAAGA
LOC_Os05g41810
Os.18757.2.S1_x_at--123--5731Chr05:24403487..24403511 (25 bp)
GACTCCTTGCTGATAATGGGATCTC
LOC_Os05g41810
Target Sequence 
GTTCTTGGTCGAGGAGCAGCGCAATAGCCCCAGCCAGGAATTGCAACCGAGGTTGGTACCAGAGGCTCATCTTGATGTGC
TCGTTGAGCATGAGGAATCAAGGAACATTGGAGGCGGGAAGACTGGAGCTCCACGGTGGCTTTCAGCTCGATTACTTGCC
ATAGTTGATGTCCAAGCATCTGCTGATTCTGTATTATCCTTACTGCAACATGAAGGTTCATTGATTCNAAGTTCATCGTG
GGATGTCTGCTGGTCATTGGCTGATGTCAACCAGAAGCAGGTTGATAATGATGCCAGATATTCCCTTGAGTGTAACAGGA
AAAATGCTTATGCTGAGTCAACAGAGCCACCAATGTTGGCCAAGTCTGCCACAAGAATTTCTATTCTAGGAGTTTCAAAC
TTAAATTCAAGTAATACAAGATGTATCAATGTTTCACTGATGCAACAACGAGGGGACTCCTTGCTGATAATGGGATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18757.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis