Browse Element(s) Details


Os.18764.1.S1_at

Description gb:AK099902.1
DB_XREF= gi:32985111
TID=Os.18764.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114G10, full insert sequence.
FL= gb:AK099902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4426011/11myotubularin related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44210Os.11002.1.S1_at11/118+27700148..27701289Dihydroneopterin aldolase, putative, expressed
LOC_Os08g44220Os.54453.1.S1_at10/118+27701741..27705263expressed protein
LOC_Os08g44220Os.50429.1.S1_at1/118+27701741..27705263expressed protein
LOC_Os08g44230Os.53754.2.S1_x_at11/118+27709586..27714790DHHC zinc finger domain containing protein, expressed
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18764.1.S1_at--368--4931Chr08:27726709..27726733 (25 bp)
GCTTGGAAGCCAGTTTGTTGGTCTA
LOC_Os08g44260
Os.18764.1.S1_at--358--10271Chr08:27726675..27726699 (25 bp)
TTTGATGCCTTCGACCGGCTATCGG
LOC_Os08g44260
Os.18764.1.S1_at--860--4251Chr08:27726661..27726685 (25 bp)
CCGGCTATCGGTACAAGACAGCTAT
LOC_Os08g44260
Os.18764.1.S1_at--674--3031Chr08:27726595..27726619 (25 bp)
AATCCAAATGCACTTGGCAGCTGCC
LOC_Os08g44260
Os.18764.1.S1_at--458--10371Chr08:27726563..27726587 (25 bp)
TTTTTTCACAAGTTGGCGCCTCCAA
LOC_Os08g44260
Os.18764.1.S1_at--528--6631Chr08:27726424..27726448 (25 bp)
GTTGTTTCTTGGAATACCTCTGTAA
LOC_Os08g44260
Os.18764.1.S1_at--918--9451Chr08:27726406..27726430 (25 bp)
TCTGTAATAGTCTCTAACTGGGCAT
LOC_Os08g44260
Os.18764.1.S1_at--576--2551Chr08:27726391..27726415 (25 bp)
AACTGGGCATTAGGCGTTCTTCACT
LOC_Os08g44260
Os.18764.1.S1_at--683--5511Chr08:27726330..27726354 (25 bp)
GAAAATCAGTCCTTCGAGCTGTATA
LOC_Os08g44260
Os.18764.1.S1_at--165--6471Chr08:27726254..27726278 (25 bp)
GATAAGGGACATTTCTTTCTTTCTT
LOC_Os08g44260
Os.18764.1.S1_at--786--2231Chr08:27726186..27726210 (25 bp)
ACAATGTGTATCCTGCTTGGTTGAA
LOC_Os08g44260
Target Sequence 
GCTTGGAAGCCAGTTTGTTGGTCTAAAGGCAAATTTTGATGCCTTCGACCGGCTATCGGTACAAGACAGCTATTTTGGTT
CAGAATAGGAAGGAGATCTTCGACTCTCCATGCCAATCCAAATGCACTTGGCAGCTGCCAATACTTTTTTTTCACAAGTT
GGCGCCTCCAAGTCCTGCACAGCTGCACTAATATCAAGCTATATGCGCGGAAAGCAAATCAAATGATNACATGCNTTTTA
ACCATTTTGCCNATGAAGTACGCCNAAGCTCACTTTTTTTTTCTTTGTTGTTGTTTCTTGGAATACCTCTGTAATAGTCT
CTAACTGGGCATTAGGCGTTCTTCACTAGAGGAGTTAGCAACTGGTTAGTAGCTACTGGGACTGAAAATCAGTCCTTCGA
GCTGTATATAGAAGGAGATAGATTCATACAGTTAACAGTATAATGCAGGATGTAAAAGGGATAAGGGACATTTCTTTCTT
TCTTTTATTTTCATTAAAATTGGTTTAGTTACGTTGGGAATAAAGAAACAATGTGTATCCTGCTTGGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis