Browse Element(s) Details


Os.1880.1.A1_at

Description gb:AK068081.1
DB_XREF= gi:32978099
TID=Os.1880.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.29 (P0421H07.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131A19, full insert sequence.
FL= gb:AK068081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3951011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1880.1.A1_at--895--271Chr07:23672729..23672753 (25 bp)
ATAGGCAAGCAATATACCATGTACT
LOC_Os07g39510
Os.1880.1.A1_at--945--9971Chr07:23672743..23672767 (25 bp)
TACCATGTACTTCGTTTGTTTAAAT
LOC_Os07g39510
Os.1880.1.A1_at--384--671Chr07:23672766..23672790 (25 bp)
ATGAAGTATCCTTGTCTGGCGTTTA
LOC_Os07g39510
Os.1880.1.A1_at--1026--3911Chr07:23672781..23672805 (25 bp)
CTGGCGTTTATTTTTGTCCGATCCA
LOC_Os07g39510
Os.1880.1.A1_at--470--6671Chr07:23672842..23672866 (25 bp)
GTTGCATCAATTTACATCACAGTAT
LOC_Os07g39510
Os.1880.1.A1_at--541--1211Chr07:23672868..23672892 (25 bp)
AGTTAAGGCATAATTGGTCATTCAA
LOC_Os07g39510
Os.1880.1.A1_at--47--191Chr07:23672900..23672924 (25 bp)
ATTTGAACAACCACTCTCAACCAAT
LOC_Os07g39510
Os.1880.1.A1_at--1117--1691Chr07:23672909..23672933 (25 bp)
ACCACTCTCAACCAATTCTTGTTTA
LOC_Os07g39510
Os.1880.1.A1_at--106--9591Chr07:23672925..23672949 (25 bp)
TCTTGTTTACATGTTGATCCGGAGT
LOC_Os07g39510
Os.1880.1.A1_at--918--6371Chr07:23672940..23672964 (25 bp)
GATCCGGAGTGAACATGACATCCAG
LOC_Os07g39510
Os.1880.1.A1_at--780--8951Chr07:23672955..23672979 (25 bp)
TGACATCCAGGGTGAACGTGAGCCT
LOC_Os07g39510
Target Sequence 
ATAGGCAAGCAATATACCATGTACTTCGTTTGTTTAAATGAAGTATCCTTGTCTGGCGTTTATTTTTGTCCGATCCANCN
AACANACATGATAATTAGGNCAATGTTGTTAATGTTGCATCAATTTACATCACAGTATTAGTTAAGGCATAATTGGTCAT
TCAAATTGATAATTTGAACAACCACTCTCAACCAATTCTTGTTTACATGTTGATCCGGAGTGAACATGACATCCAGGGTG
AACGTGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1880.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis