Browse Element(s) Details


Os.18830.1.S1_at

Description gb:AK108010.1
DB_XREF= gi:32993219
TID=Os.18830.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H04, full insert sequence.
FL= gb:AK099445.1 gb:AK108010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4415011/11ornithine aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44110OsAffx.25532.1.S1_at11/113+24738157..24740896phosphonate metabolism protein, putative
LOC_Os03g44130OsAffx.617.1.A1_at11/113+24746867..24748716expressed protein
LOC_Os03g44130OsAffx.617.1.A1_x_at11/113+24746867..24748716expressed protein
LOC_Os03g44130Os.31879.1.S1_at9/113+24746867..24748716expressed protein
LOC_Os03g44140OsAffx.25531.1.S1_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.1.S1_x_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.2.S1_x_at1/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18830.1.S1_at--869--4571Chr03:24771958..24771982 (25 bp)
GCGCTGACGTCCGAGGAGCTCATGC
LOC_Os03g44150
Os.18830.1.S1_at--530--9491Chr03:24771144..24771168 (25 bp)
TCTCCAAGGGAGAAGGTTCACATAT
LOC_Os03g44150
Os.18830.1.S1_at--77--2911Chr03:24771132..24771156 (25 bp)
AAGGTTCACATATATTGGATCCTGA
LOC_Os03g44150
Os.18830.1.S1_at--999--7951Chr03:24771116..24771140 (25 bp)
GGATCCTGAAGGCAACAAATACATT
LOC_Os03g44150
Os.18830.1.S1_at--702--3091Chr03:24771099..24771123 (25 bp)
AATACATTGATTTCCTGTCTGCTTA
LOC_Os03g44150
Os.18830.1.S1_at--757--9271Chr03:24771087..24771111 (25 bp)
TCCTGTCTGCTTATTCTGCAGTCAA
LOC_Os03g44150
Os.18830.1.S1_at--1147--10591Chr03:24770926..24771098 (25 bp)
TTCTGCAGTCAATCAGGGCCATTGC
LOC_Os03g44150
Os.18830.1.S1_at--519--9191Chr03:24770904..24770928 (25 bp)
TGCCATCCAAAAGTCCTGAGAGCGT
LOC_Os03g44150
Os.18830.1.S1_at--970--9691Chr03:24770858..24770882 (25 bp)
TCACACTGAGTTCTAGAGCTTTCTA
LOC_Os03g44150
Os.18830.1.S1_at--184--6291Chr03:24770776..24770800 (25 bp)
GATGTTGCCGATGAATACTGGAGCT
LOC_Os03g44150
Os.18830.1.S1_at--587--5292Chr06:20984299..20984318 (20 bp)
GAAGGAGTGGAAACAGCTATCAAAT
NONE
Target Sequence 
GCGCTGACGTCCGAGGAGCTCATGCGGATGGAGCGCGAGCGCAGCGCGCACAACTANCATCCAATTCCGGTGGTGTTCTC
CAAGGGAGAAGGTTCACATATATTGGATCCTGAAGGCAACAAATACATTGATTTCCTGTCTGCTTATTCTGCAGTCAATC
AGGGCCATTGCCATCCAAAAGTCCTGAGAGCGTTGAAAGANCAGGCAGAAAGGCTCACACTGAGTTCTAGAGCTTTCTAC
AATGACAAATTCCCAATCTTTGCNGAATACCTGACNAGCATGTTTGGNTATGAAATGATGTTGCCGATGAATACTGGAGC
TGAAGGAGTGGAAACAGCTATCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis