Browse Element(s) Details


Os.18850.1.S1_at

Description gb:AK120673.1
DB_XREF= gi:37990296
TID=Os.18850.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0094K20.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161G16, full insert sequence.
FL= gb:AK120673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3087011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30850Os.9393.1.S1_a_at10/1110+15755079..15757298RNA-binding protein, putative, expressed
LOC_Os10g30860Os.17895.1.S1_a_at11/1110+15763382..15767033expressed protein
LOC_Os10g30860Os.17895.2.S1_x_at10/1110+15763382..15767033expressed protein
LOC_Os10g30870Os.18850.1.S1_at11/1110+15767192..15769159expressed protein
LOC_Os10g30870OsAffx.27220.1.S1_at1/1110+15767192..15769159expressed protein
LOC_Os10g30880Os.30124.1.S1_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.30124.1.S1_x_at11/1110+15776905..15777987expressed protein
LOC_Os10g30880Os.56086.1.S1_at1/1110+15776905..15777987expressed protein
LOC_Os10g30890Os.14361.1.S1_at10/1110+15780621..15782714expressed protein
LOC_Os10g30900OsAffx.6826.1.S1_at11/1110+15785551..15785936hypothetical protein
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18850.1.S1_at--1060--5771Chr10:15767693..15767717 (25 bp)
GACGACGAGTGGGACTGAGGATTTT
LOC_Os10g30870
Os.18850.1.S1_at--699--8671Chr10:15767678..15767702 (25 bp)
TGAGGATTTTGAGAGAGGGTTTTTT
LOC_Os10g30870
Os.18850.1.S1_at--398--9431Chr10:15767649..15767673 (25 bp)
TCGGTAATGCGTAATTTTCTCTTGG
LOC_Os10g30870
Os.18850.1.S1_at--928--9731Chr10:15767645..15767669 (25 bp)
TAATGCGTAATTTTCTCTTGGTAAA
LOC_Os10g30870
Os.18850.1.S1_at--1102--2431Chr10:15767618..15767642 (25 bp)
AACACAAAATCTCTCCCTAATTCTC
LOC_Os10g30870
Os.18850.1.S1_at--604--2271Chr10:15767612..15767636 (25 bp)
AAATCTCTCCCTAATTCTCATCATT
LOC_Os10g30870
Os.18850.1.S1_at--799--111Chr10:15767599..15767623 (25 bp)
ATTCTCATCATTTCATAGTTCATGA
LOC_Os10g30870
Os.18850.1.S1_at--1087--9831Chr10:15767538..15767562 (25 bp)
TACAGTATAAACTCATAGGGAACAT
LOC_Os10g30870
Os.18850.1.S1_at--125--9591Chr10:15767526..15767550 (25 bp)
TCATAGGGAACATGGCAGATGCGAT
LOC_Os10g30870
Os.18850.1.S1_at--1072--8451Chr10:15767497..15767521 (25 bp)
TGGCCTTTGTCATTGCTTAATTTCT
LOC_Os10g30870
Os.18850.1.S1_at--289--4311Chr10:15767494..15767518 (25 bp)
CCTTTGTCATTGCTTAATTTCTTCA
LOC_Os10g30870
Target Sequence 
GACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTNTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACAC
AAAATCTCTCCCTAATTCTCATCATTTCATAGTTCATGAATGGATTATTAGGGGAAATCAGTTGTTTCTTTTTATTACAG
TATAAACTCATAGGGAACATGGCAGATGCGATGCTNTGGCCTTTGTCATTGCTTAATTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis