Browse Element(s) Details


Os.18899.1.S1_at

Description gb:AK111518.1
DB_XREF= gi:37988181
TID=Os.18899.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.18899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002H05, full insert sequence.
FL= gb:AK111518.1 gb:AK112052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1498011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified
LOC_Os03g14940NANA3+8123291..8124148retrotransposon protein, putative, unclassified
LOC_Os03g14950OsAffx.12869.1.S1_s_at11/113+8131605..8133696Patatin-like phospholipase family protein, expressed
LOC_Os03g14959NANA3+8138940..8139888NA
LOC_Os03g14968NANA3+8142515..8142677NA
LOC_Os03g14980Os.18899.1.S1_at11/113+8144880..8153948expressed protein
LOC_Os03g14980OsAffx.18788.1.S1_at1/113+8144880..8153948expressed protein
LOC_Os03g14990Os.17891.1.S1_at11/113+8156809..8160796Chorismate synthase 2, chloroplast precursor, putative, expressed
LOC_Os03g15000Os.18247.1.S1_a_at11/113+8161300..8165799zinc finger family protein, putative, expressed
LOC_Os03g15010Os.9532.1.S1_at11/113+8170947..8174224transposon protein, putative, unclassified, expressed
LOC_Os03g15020Os.22360.1.S1_at11/113+8175123..8181097Beta-galactosidase precursor, putative, expressed
LOC_Os03g15020OsAffx.3603.1.S1_at1/113+8175123..8181097Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18899.1.S1_at--187--4991Chr03:8146331..8146355 (25 bp)
GCATCCTATCTTCCTCAGAATATCA
LOC_Os03g14980
Os.18899.1.S1_at--524--10351Chr03:8145741..8145765 (25 bp)
TTTATCCTGTCGTTGTGGCGGCACA
LOC_Os03g14980
Os.18899.1.S1_at--136--8491Chr03:8145726..8145750 (25 bp)
TGGCGGCACATCCTTCGGAAGCAAA
LOC_Os03g14980
Os.18899.1.S1_at--288--2271Chr03:8145704..8145728 (25 bp)
AAATCAGTTTGCTCTAGGCCTGACT
LOC_Os03g14980
Os.18899.1.S1_at--1019--871Chr03:8145689..8145713 (25 bp)
AGGCCTGACTGATGGTGGTGTTTAT
LOC_Os03g14980
Os.18899.1.S1_at--388--6871Chr03:8145664..8145688 (25 bp)
GTATTGGAACCCTTGGAATCTGAGA
LOC_Os03g14980
Os.18899.1.S1_at--277--7631Chr03:8145632..8145656 (25 bp)
GGGAAATCCTCCACCAGCAGAGAAT
LOC_Os03g14980
Os.18899.1.S1_at--498--1472Chr02:15361106..15361134 (24 bp)
AGAATGGATCAACCAGCGCTTTGTC
NONE
Os.18899.1.S1_at--225--10551Chr03:8145127..8145151 (25 bp)
TTCCCTTCCGTAGAGCTGGTTCCAA
LOC_Os03g14980
Os.18899.1.S1_at--880--6671Chr03:8145048..8145072 (25 bp)
GTTGCTTATATGTCTCACTGTTATC
LOC_Os03g14980
Os.18899.1.S1_at--986--10491Chr03:8144990..8145014 (25 bp)
TTAATTTTGCTGTCTGTCGTGCTGT
LOC_Os03g14980
Target Sequence 
GCATCCTATCTTCCTCAGAATATCAGCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAGTT
TGCTCTAGGCCTGACTGATGGTGGTGTTTATGTATTGGAACCCTTGGAATCTGAGAGAAAATGGGGAAATCCTCCACCAG
CAGAGAATGGATCAACCAGCGCTTTGTCCACACCTCCTAATGGAGCATCAAGTTCTGATCAACCAGAAAGATAATGATGA
GGAGTTTGAAGTGTTACATTTTTTGTACTTGCACGGTACAAATTCACTAACCAAGACGATGCACTTCACNCTTACANCTT
CCCTTCCGTAGAGCTGGTTCCAAGGGGTAGTCGATGAACGGACGGAATAAAAAGACAAGCTTAACAGCAGTTCATTTGTT
GCTTATATGTCTCACTGTTATCTGTATTAAGTGAGGGAAGAGTTAGTCCTAGTATTTAATTTTGCTGTCTGTCGTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis