Browse Element(s) Details


Os.18984.1.S1_at

Description gb:AK063861.1
DB_XREF= gi:32973879
TID=Os.18984.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D11, full insert sequence.
FL= gb:AK063861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3093410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30880NANA3+17552622..17553505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30890Os.26892.1.A1_at11/113+17554190..17558432D-mannose binding lectin family protein, expressed
LOC_Os03g30910OsAffx.13137.1.S1_at11/113+17560174..17562653NB-ARC domain containing protein, expressed
LOC_Os03g30920Os.52888.1.S1_at11/113+17566246..17568562F-box domain containing protein, expressed
LOC_Os03g30934Os.18984.1.S1_at10/113+17571154..17577125expressed protein
LOC_Os03g30934OsAffx.3376.1.S1_at8/113+17571154..17577125expressed protein
LOC_Os03g30950Os.18462.1.S1_at11/113+17578411..17579996Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os03g30970OsAffx.447.1.S1_at4/113+17586969..17588429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30980OsAffx.31069.2.S1_x_at1/113+17598927..17602595hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18984.1.S1_at--852--2831Chr03:17572056..17572076 (21 bp)
AAGTGATTTTTTGCAATGGTCCAGG
LOC_Os03g30934
Os.18984.1.S1_at--1049--811Chr03:17572041..17572065 (25 bp)
ATGGTCCAGGGACATGCATTCCTCT
LOC_Os03g30934
Os.18984.1.S1_at--1003--7151NONE
GTCTCGGCTTTTCTTCTGAAGGTGC
NONE
Os.18984.1.S1_at--961--10811Chr03:17571607..17571631 (25 bp)
TTGGGATGGTCCTCCATTTTCTACA
LOC_Os03g30934
Os.18984.1.S1_at--1127--4671Chr03:17571546..17571570 (25 bp)
GCGGTTTACTGTTGTACAAGCTACG
LOC_Os03g30934
Os.18984.1.S1_at--978--8831Chr03:17571515..17571539 (25 bp)
TGATCAGTTCTTCGTGCAGTGGCCC
LOC_Os03g30934
Os.18984.1.S1_at--584--1091Chr03:17571498..17571522 (25 bp)
AGTGGCCCCAGCTGCAGCAAAAATA
LOC_Os03g30934
Os.18984.1.S1_at--717--2411Chr03:17571480..17571504 (25 bp)
AAAAATACCCTCGAGCATGCTATGC
LOC_Os03g30934
Os.18984.1.S1_at--976--3691Chr03:17571461..17571485 (25 bp)
CTATGCCGGCCGTTTAATGTAAAGA
LOC_Os03g30934
Os.18984.1.S1_at--351--171Chr03:17571198..17571222 (25 bp)
ATTTTGTACCTCCAGTTCCTTCTAT
LOC_Os03g30934
Os.18984.1.S1_at--454--231Chr03:17571155..17571179 (25 bp)
ATATATCTTCGTGCATTATGGCCAG
LOC_Os03g30934
Target Sequence 
AAGTGATTTTTTGCAATGGTCCAGGGACATGCATTCCTCTGTGTGTCTCGGCTTTTCTTCTGAAGGTGCTTGGTTTGGGA
TGGTCCTCCATTTTCTACATCGAAAGCATTGCAAGAGTGAAGAAGCTTTCATTAAGCGGTTTACTGTTGTACAAGCTACG
AATAGCTGATCAGTTCTTCGTGCAGTGGCCCCAGCTGCAGCAAAAATACCCTCGAGCATGCTATGCCGGCCGTTTAATGT
AAAGATTCACGCATAGATGATAATATTGCTTTACAGCAAAATGCTAATGGTTTTATATTGCAGATGTTCTTCTGATTAGA
TGTGACGTTTGTCAAATATTTTTCTTCCTTTTCAACAGACTGGACTGGTNATTATCTAAAAAAAAACAGACTGGACTGGA
GTGATAGATAGATGCCATGAACCGAGGAGATATTGCATCTGTATAGAAGTAATTTTGTGTAACTATACTATGTAACTATA
CTCATTTTGTACCTCCAGTTCCTTCTATTACTGGTGAAACTAATGAATATATCTTCGTGCATTATGGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis