Browse Element(s) Details


Os.19000.1.S1_at

Description gb:AK106582.1
DB_XREF= gi:32991791
TID=Os.19000.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E03, full insert sequence.
FL= gb:AK106582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3253011/11Potassium transporter 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32510OsAffx.28712.1.S1_at11/117+19360911..19363044Dof domain, zinc finger family protein, expressed
LOC_Os07g32520OsAffx.16525.1.S1_at11/117+19368359..19369118hypothetical protein
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19000.1.S1_at--1097--9671Chr07:19377185..19377209 (25 bp)
TCACTTTTACCTACACTCATCTTTA
LOC_Os07g32530
Os.19000.1.S1_at--339--771Chr07:19377161..19377185 (25 bp)
ATGTCTGAATGTCTCCTTGCTGTAA
LOC_Os07g32530
Os.19000.1.S1_at--955--4731Chr07:19377143..19377167 (25 bp)
GCTGTAATTCACCAAGACGCTGTCC
LOC_Os07g32530
Os.19000.1.S1_at--585--5271Chr07:19377084..19377108 (25 bp)
GAATGCAAGCCTTGTCATGTCCCAG
LOC_Os07g32530
Os.19000.1.S1_at--930--10271Chr07:19377033..19377057 (25 bp)
TTTGCTTGTCCGCTTGTGTTTAGAA
LOC_Os07g32530
Os.19000.1.S1_at--919--5231Chr07:19376949..19376973 (25 bp)
GAATCACCGAGTATCCTTGTACACG
LOC_Os07g32530
Os.19000.1.S1_at--213--2271Chr07:19376897..19376921 (25 bp)
AAATCAATGGCTCCCCAGATCAGAT
LOC_Os07g32530
Os.19000.1.S1_at--994--1271Chr07:19376881..19376905 (25 bp)
AGATCAGATCGGTCGTTCTCCTTCA
LOC_Os07g32530
Os.19000.1.S1_at--786--7431Chr07:19376856..19376880 (25 bp)
GTGTACTGCTTACCACTACTACTGG
LOC_Os07g32530
Os.19000.1.S1_at--518--4831Chr07:19376825..19376849 (25 bp)
GCTCAGTATTTAATCAGGCGCTCTT
LOC_Os07g32530
Os.19000.1.S1_at--574--7171Chr07:19376750..19376774 (25 bp)
GTCTCCAGTCACGACGATGTTGTGT
LOC_Os07g32530
Target Sequence 
TCACTTTTACCTACACTCATCTTTATGTCTGAATGTCTCCTTGCTGTAATTCACCAAGACGCTGTCCTCCTGGGGTGAAG
GCACTGGAGCCTGAATCTGCTGAATGCAAGCCTTGTCATGTCCCAGCCAACACAAAACCTGCCCTGGCGGCTTTTGCTTG
TCCGCTTGTGTTTAGAAGAATCGGAGACAGGGCAGAGCTATCAATTGTCACAGCTGCACGGCTGCGCCAATCACTCGAAT
CACCGAGTATCCTTGTACACGCCGTACGCCCCTCCTCCTGCCCGCTCTAAATCAATGGCTCCCCAGATCAGATCGGTCGT
TCTCCTTCAGTGTACTGCTTACCACTACTACTGGCTCAGAGCTCAGTATTTAATCAGGCGCTCTTGATGATCACTGGAGT
ATTAACACTCGAAACCTGAAGCATCGGGAGCGTTTGTCTCCAGTCACGACGATGTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis