Browse Element(s) Details


Os.19099.1.S1_x_at

Description gb:BM038075
DB_XREF= gi:16753696
DB_XREF=U002D09
CLONE=U002D09
TID=Os.19099.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19099 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0185011/11retrotransposon, putative, centromere-specific
LOC_Os05g086602/11retrotransposon, putative, centromere-specific
LOC_Os07g240702/11retrotransposon, putative, centromere-specific
LOC_Os08g040802/11retrotransposon, putative, centromere-specific
LOC_Os01g368002/11retrotransposon, putative, centromere-specific
LOC_Os08g300501/11retrotransposon, putative, centromere-specific
LOC_Os04g183601/11retrotransposon, putative, centromere-specific
LOC_Os03g560401/11retrotransposon, putative, centromere-specific
LOC_Os09g043201/11retrotransposon, putative, centromere-specific
LOC_Os05g086501/11retrotransposon, putative, centromere-specific
LOC_Os01g310101/11retrotransposon, putative, centromere-specific
LOC_Os04g350501/11retrotransposon, putative, centromere-specific
LOC_Os03g265401/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01800OsAffx.30234.1.S1_at11/1110+510294..511478Transferase family protein
LOC_Os10g01810OsAffx.6549.1.S1_at11/1110+512470..512873hypothetical protein
LOC_Os10g01820Os.54284.1.A1_at11/1110+513590..517749expressed protein
LOC_Os10g01820Os.14574.1.S1_at1/1110+513590..517749expressed protein
LOC_Os10g01830OsAffx.8570.1.S1_at10/1110+520105..522173hypothetical protein
LOC_Os10g01840OsAffx.18079.1.S1_at11/1110+525039..526779hypothetical protein
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01860OsAffx.20812.1.S1_at11/1110+544493..545748retrotransposon protein, putative, LINE subclass
LOC_Os10g01870OsAffx.18080.1.S1_at11/1110+546822..548871hypothetical protein
LOC_Os10g01880NANA10+551558..553967hypothetical protein
LOC_Os10g01890OsAffx.435.1.S1_at11/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01890OsAffx.19377.1.S1_at1/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01900OsAffx.20810.1.S1_at11/1110+558728..559919retrotransposon protein, putative, LINE subclass
LOC_Os10g01910OsAffx.20809.1.S1_at11/1110+560328..565291retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g01920Os.46590.1.S1_at11/1110+567171..568806Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19099.1.S1_x_at--1031--65521Chr09:2294411..2294435 (25 bp)
GATTAATTGTAAGTTTAGCCATTGC
LOC_Os09g04320
Os.19099.1.S1_x_at--493--9471Chr10:540348..540372 (25 bp)
TCTGCTTGTTCGGAACCCTACTTTA
LOC_Os10g01850
Os.19099.1.S1_x_at--594--3791Chr10:540347..540371 (25 bp)
CTGCTTGTTCGGAACCCTACTTTAT
LOC_Os10g01850
Os.19099.1.S1_x_at--891--8751Chr10:540346..540370 (25 bp)
TGCTTGTTCGGAACCCTACTTTATC
LOC_Os10g01850
Os.19099.1.S1_x_at--9--4691Chr10:540345..540369 (25 bp)
GCTTGTTCGGAACCCTACTTTATCG
LOC_Os10g01850
Os.19099.1.S1_x_at--643--9391Chr10:540343..540367 (25 bp)
TTGTTCGGAACCCTACTTTATCGTG
LOC_Os10g01850
Os.19099.1.S1_x_at--857--8791Chr10:540342..540366 (25 bp)
TGTTCGGAACCCTACTTTATCGTGT
LOC_Os10g01850
Os.19099.1.S1_x_at--61--10251Chr10:540340..540364 (25 bp)
TTCGGAACCCTACTTTATCGTGTAT
LOC_Os10g01850
Os.19099.1.S1_x_at--1076--9391Chr10:540339..540363 (25 bp)
TCGGAACCCTACTTTATCGTGTATC
LOC_Os10g01850
Os.19099.1.S1_x_at--932--5431Chr10:540336..540360 (25 bp)
GAACCCTACTTTATCGTGTATCAAT
LOC_Os10g01850
Os.19099.1.S1_x_at--738--74312Chr07:13647808..13647832 (25 bp)
GTGTATCAATTCATCTTTGTGCGTC
LOC_Os07g24070
Target Sequence 
GATTAATTGTAAGTTTAGCCATTGCTACTTCGCTTGCAGTGCACGTGTCGGCTAGACCGTCCGTCTGCTTGTTCGGAACC
CTACTTTATCGTGTATCAATTCATCTTTGTGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19099.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis