Browse Element(s) Details


Os.19407.1.S1_at

Description gb:AK100057.1
DB_XREF= gi:32985266
TID=Os.19407.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158B16, full insert sequence.
FL= gb:AK100057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3381011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33760OsAffx.14946.1.S1_at11/115+19811318..19816681pentatricopeptide, putative, expressed
LOC_Os05g33770OsAffx.4509.1.S1_s_at11/115+19817556..19817954hypothetical protein
LOC_Os05g33770OsAffx.4509.1.S1_x_at11/115+19817556..19817954hypothetical protein
LOC_Os05g33780NANA5+19819409..19819771hypothetical protein
LOC_Os05g33790OsAffx.19542.3.S1_x_at7/115+19827393..19831614retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33800OsAffx.4343.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33800OsAffx.15708.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33810Os.19407.1.S1_at11/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.45957.3.S1_x_at3/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.49445.1.S1_at1/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33820Os.27565.1.S1_a_at11/115+19851468..19855093L1 Lipase, putative, expressed
LOC_Os05g33830NANA5+19870231..19870920Zinc finger, C3HC4 type family protein
LOC_Os05g33840Os.7505.2.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840Os.7505.1.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840OsAffx.3991.1.S1_at1/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19407.1.S1_at--99--10312Chr05:7304990..7305017 (25 bp)
TTTCTGTGCCACTTGCTGAAAGTAC
NONE
Os.19407.1.S1_at--998--3011Chr05:19848818..19848842 (25 bp)
AATGCTGTCACCCTGAGACTAGTGC
LOC_Os05g33810
Os.19407.1.S1_at--683--7311Chr05:19848839..19848863 (25 bp)
GTGCTAGATGGCTTAACGCTGCCTC
LOC_Os05g33810
Os.19407.1.S1_at--982--7271Chr05:19848884..19848908 (25 bp)
GTGCCATGAGAATGCGTCTTGCCAC
LOC_Os05g33810
Os.19407.1.S1_at--581--10731Chr05:19848938..19848962 (25 bp)
TTGCAGCTTGTGTTGTCCTTTTCCA
LOC_Os05g33810
Os.19407.1.S1_at--597--9071Chr05:19848980..19849004 (25 bp)
TGCTTGCCGCGCCAGTAAAGAGGTA
LOC_Os05g33810
Os.19407.1.S1_at--1116--7831Chr05:19849001..19849025 (25 bp)
GGTACTTGTCTAGGAACTACTCATC
LOC_Os05g33810
Os.19407.1.S1_at--447--10051Chr05:19849042..19849066 (25 bp)
TAGATTAACCTTCCTGTTGCTTTTC
LOC_Os05g33810
Os.19407.1.S1_at--307--10711Chr05:19849058..19849082 (25 bp)
TTGCTTTTCCCCTGTATCATATGCA
LOC_Os05g33810
Os.19407.1.S1_at--419--10771Chr05:19849097..19849121 (25 bp)
TTGAGGCTTAGCTTGTGCATCCGAT
LOC_Os05g33810
Os.19407.1.S1_at--145--4951Chr05:19849194..19849218 (25 bp)
GCATATAGTTGCCTGAAGACCTGAA
LOC_Os05g33810
Target Sequence 
TTTCTGTGCCACTTGCTGAAAGTACTGGAACCAGTGGAGAACATGATTTGCACNCAACCAATGCAGCTTCTGGAGAGGAG
GAAAATATGCCTCNAGTGACTAAAGCTCTCCCACACAGGCAATGCTGTCACCCTGAGACTAGTGCTAGATGGCTTAACGC
TGCCTCCATTGGTGCTTTTCCAGGTGGTGCCATGAGAATGCGTCTTGCCACCACTGTGGTAATTGGTGCTGTGGTATGTT
TTGCAGCTTGTGTTGTCCTTTTCCACCCACACAGAGTAGGGGTGCTTGCCGCGCCAGTAAAGAGGTACTTGTCTAGGAAC
TACTCATCATAGTTGAAGCTAGATTAGATTAACCTTCCTGTTGCTTTTCCCCTGTATCATATGCATGTACCTTTCTAATT
TGAGGCTTAGCTTGTGCATCCGATGTTCAAATATTTGTAAGAGGACCCACAGGCATAAATGCAAATTTTTGCAGCTTTTT
TTGGCAAAAAGTATGAGCATATAGTTGCCTGAAGACCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis