Browse Element(s) Details


Os.19410.2.S1_at

Description gb:AK120016.1
DB_XREF= gi:37989639
TID=Os.19410.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B09, full insert sequence.
FL= gb:AK120016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g296102/11hypothetical protein
LOC_Os12g218601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29560NANA1+16892399..16898286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29570NANA1+16899062..16899709hypothetical protein
LOC_Os01g29580NANA1+16902613..16905757retrotransposon protein, putative, unclassified
LOC_Os01g29590NANA1+16906517..16911802retrotransposon protein, putative, unclassified
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19410.2.S1_at--776--1491Chr04:4739028..4739052 (25 bp)
AGCACAGCAACATTGATCTTTCTTA
NONE
Os.19410.2.S1_at--922--6411NONE
GATCTTTCTTATGGGTGGTTGCTTT
NONE
Os.19410.2.S1_at--1075--7711Chr04:4739009..4739078 (25 bp)
GGGTGGTTGCTTTAGCTACCACAAT
NONE
Os.19410.2.S1_at--160--3252Chr04:4739088..4739112 (25 bp)
CAAGCTCGTGATGTGTTGCAAGATC
NONE
Os.19410.2.S1_at--462--7412Chr04:4739100..4739124 (25 bp)
GTGTTGCAAGATCTAGAGTAGTCTA
NONE
Os.19410.2.S1_at--1029--6071Chr04:4739115..4739139 (25 bp)
GAGTAGTCTAGCGAAACCTATGTCA
NONE
Os.19410.2.S1_at--834--5551Chr04:4739127..4739151 (25 bp)
GAAACCTATGTCATAAGTGCCACAA
NONE
Os.19410.2.S1_at--691--351Chr04:4739139..4739163 (25 bp)
ATAAGTGCCACAATTCCAAACCGAA
NONE
Os.19410.2.S1_at--545--1111Chr04:4739172..4739196 (25 bp)
AGTGTATTGTTCGATGTGGCTGCTA
NONE
Os.19410.2.S1_at--1116--6253Chr04:4739184..4739208 (25 bp)
GATGTGGCTGCTATAGTTTTTTACT
NONE
Os.19410.2.S1_at--79--194Chr12:12305297..12305324 (24 bp)
ATTTATTTGTTCTATGGCTTGTGTA
LOC_Os12g21860
Target Sequence 
AGCACAGCAACATTGATCTTTCTTATGGGTGGTTGCTTTAGCTACCACAATGCTTATTTGCAAGCTCGTGATGTGTTGCA
AGATCTAGAGTAGTCTAGCGAAACCTATGTCATAAGTGCCACAATTCCAAACCGAACCTCCCCCAGTGTATTGTTCGATG
TGGCTGCTATAGTTTTTTACTAAAAGTATGTAAATTTATTTGTTCTATGGCTTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19410.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis