Browse Element(s) Details


Os.19410.3.S1_at

Description gb:AK111774.1
DB_XREF= gi:37988437
TID=Os.19410.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072J21, full insert sequence.
FL= gb:AK111774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g296104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29560NANA1+16892399..16898286retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29570NANA1+16899062..16899709hypothetical protein
LOC_Os01g29580NANA1+16902613..16905757retrotransposon protein, putative, unclassified
LOC_Os01g29590NANA1+16906517..16911802retrotransposon protein, putative, unclassified
LOC_Os01g29600OsAffx.30618.1.S1_at10/111+16915402..16916028hypothetical protein
LOC_Os01g29610Os.43072.1.S1_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.43072.1.S1_x_at11/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.5.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.17455.1.S1_at6/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_x_at5/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.3.S1_at4/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.2.S1_at2/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.19410.4.A1_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610Os.12010.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29610OsAffx.3097.1.S1_x_at1/111+16917384..16924325hypothetical protein
LOC_Os01g29620OsAffx.19542.3.S1_x_at3/111+16928784..16932692retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29640OsAffx.23450.1.S1_at8/111+16939592..16940065hypothetical protein
LOC_Os01g29650NANA1+16943797..16946112retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29660OsAffx.22947.1.S1_x_at9/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.3.S1_x_at6/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29660OsAffx.22947.2.S1_x_at5/111+16948266..16949495retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19410.3.S1_at--211--3573Chr04:4742903..4742927 (25 bp)
CTTGTAATCAGGAAAGTGAAGCATC
NONE
Os.19410.3.S1_at--895--9013Chr04:4743095..4743119 (25 bp)
TGCAAGCTACAAATGCTTTGCTGTA
NONE
Os.19410.3.S1_at--414--2193Chr04:4743103..4743127 (25 bp)
ACAAATGCTTTGCTGTAGATATGAA
NONE
Os.19410.3.S1_at--1076--2833Chr04:4743167..4743187 (21 bp)
AAGTCCCATTAACCAGGAAGGATGT
NONE
Os.19410.3.S1_at--829--10491NONE
TTAACCAGGAAGGATGTGATGCGAT
NONE
Os.19410.3.S1_at--458--5471Chr10:15822168..15822192 (25 bp)
GAACTAAAAGTCAAACAAACTGAGG
NONE
Os.19410.3.S1_at--70--153Chr04:4744641..4744665 (25 bp)
ATTACTTTGTAGTTACATGGGATAT
NONE
Os.19410.3.S1_at--239--6772Chr01:16924493..16924517 (25 bp)
GTTACATGGGATATTTGTTACATAG
NONE
Os.19410.3.S1_at--214--8791NONE
TGTTACATAGGATGGATTACTGGCT
NONE
Os.19410.3.S1_at--831--4831Chr10:15822056..15822079 (24 bp)
GCTCAACTCTGGTGTCATTGATATA
NONE
Os.19410.3.S1_at--483--7133Chr04:4744702..4744726 (25 bp)
GTCATTGATATACACAGGAGAGTTA
NONE
Target Sequence 
CTTGTAATCAGGAAAGTGAAGCATCTAAGTTAGATGAGGATTGTTGTACCTTGGCCATGAAATGACTGAGAGAGCCCTAT
CCAGTTCTGTTGAGAGCCTCACAGTGTTTGATGAATTGCAAGCTACAAATGCTTTGCTGTAGATATGAATTGCAAGCTTA
CAGAAAAGGTTTTGCACTGTGGGCTAAAAAGTCCCATTAACCAGGAAGGATGTGATGCGATGCTGAATCTAATATTGGAA
AGTCAAGCCCTTTGTTCTTCAATTGTCCTATTTGCAAAGATTATGACCTTTCAATTTGTCATCAATTATTTATGACACCA
ATGCATTCTCTTGGTGTATGCACCAAAGCAATTTGTACGCGGAATTACTTATATTTTTTATATAATGAAAGCATTGTGTT
CATGTTTGAACTAAAAGTCAAACAAACTGAGGTTTTAGTAGGGGATGCTTTGCATTGATAATAAAGTACCCATTACTTTG
TAGTTACATGGGATATTTGTTACATAGGATGGATTACTGGCTCAACTCTGGTGTCATTGATATACACAGGAGAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19410.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis