Browse Element(s) Details


Os.19506.1.S1_at

Description gb:AK100448.1
DB_XREF= gi:32985657
TID=Os.19506.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090M19, full insert sequence.
FL= gb:AK100448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g216104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21570OsAffx.26086.1.S1_at11/114+12172341..12173177Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os04g21580Os.5266.1.S1_at11/114+12180687..12181785retrotransposon protein, putative, unclassified, expressed
LOC_Os04g21590Os.29775.1.S1_at10/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21590OsAffx.13908.1.S1_x_at1/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21600Os.52131.1.S1_at11/114+12188922..12193009expressed protein
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein
LOC_Os04g21650Os.10509.1.S1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.10509.2.S1_x_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.23945.1.A1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650OsAffx.26326.1.S1_at2/114+12218212..12226554expressed protein
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19506.1.S1_at--505--471Chr04:12196631..12196655 (25 bp)
ATCTGCTCAACTAGTACCGTTCCGC
LOC_Os04g21610
Os.19506.1.S1_at--461--1251Chr04:12196453..12196477 (25 bp)
AGATTGTGCTGAGCCTACCCCGTGC
LOC_Os04g21610
Os.19506.1.S1_at--1008--9951Chr04:12196438..12196462 (25 bp)
TACCCCGTGCTCTGAAGCGGATACT
LOC_Os04g21610
Os.19506.1.S1_at--307--1611Chr04:12196423..12196447 (25 bp)
AGCGGATACTCTCTTCTCAGGAAAG
LOC_Os04g21610
Os.19506.1.S1_at--649--6591Chr04:12196397..12196421 (25 bp)
GATTGATGCGTGTACTAGGAGTTTT
NONE
Os.19506.1.S1_at--96--8911Chr04:12196366..12196390 (25 bp)
TGAGACTCATGGACGCAGAAGCTTT
NONE
Os.19506.1.S1_at--289--1451Chr04:12196350..12196374 (25 bp)
AGAAGCTTTCGGTGCTATATGCAGA
NONE
Os.19506.1.S1_at--106--1431Chr04:12196208..12196232 (25 bp)
AGAAACACTGCTTTCAACCATCCAT
NONE
Os.19506.1.S1_at--917--2631Chr04:12196193..12196217 (25 bp)
AACCATCCATGTAATATTCGTGCAC
NONE
Os.19506.1.S1_at--1085--5111Chr04:12196172..12196196 (25 bp)
GCACAGCAAGCACGGAAGCAGATTT
NONE
Os.19506.1.S1_at--1028--5031Chr04:12196155..12196179 (25 bp)
GCAGATTTCATACCATGACAGGAGT
NONE
Target Sequence 
ATCTGCTCAACTAGTACCGTTCCGCCTTCCCTACGCNGAGGATGCGCTGAAGACCTTGAGTTTNGCCAGAAGCGTTTGCG
GAGATTGTGCTGAGCCTACCCCGTGCTCTGAAGCGGATACTCTCTTCTCAGGAAAGTGATTGATGCGTGTACTAGGAGTT
TTTGGTAATGAGACTCATGGACGCAGAAGCTTTCGGTGCTATATGCAGAGTATTCGGTGNCCNTTACTGACNGAGATACA
AAATGTTCGNCAGTATTGTTTAGAATATTGTAGTGTACANGTTGNTTACTGNTCTAGAAAATGCGATTGNCTGCGAAGCC
AGTTGGATAACAAGAAACACTGCTTTCAACCATCCATGTAATATTCGTGCACAGCAAGCACGGAAGCAGATTTCATACCA
TGACAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis