Browse Element(s) Details


Os.19508.1.S1_at

Description gb:AK070907.1
DB_XREF= gi:32980930
TID=Os.19508.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064G17, full insert sequence.
FL= gb:AK070907.1 gb:AK100370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3997011/11ENT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein
LOC_Os08g39940OsAffx.17426.1.S1_at11/118+25176585..25178901Leucine Rich Repeat family protein
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19508.1.S1_at--398--5691Chr08:25191445..25191469 (25 bp)
GACTTGACGAAGCATCTGATGGTGA
LOC_Os08g39970
Os.19508.1.S1_at--231--6511Chr08:25192204..25192228 (25 bp)
GATATTGTGCTCGTTGCAAGCCAAC
LOC_Os08g39970
Os.19508.1.S1_at--94--3711Chr08:25192228..25192252 (25 bp)
CTAGGTACTACCGTTGCATGACATC
LOC_Os08g39970
Os.19508.1.S1_at--1017--7731Chr08:25192253..25192277 (25 bp)
GGTGGTCATGGCATCACTTGCTGGT
LOC_Os08g39970
Os.19508.1.S1_at--111--2071Chr08:25192268..25192292 (25 bp)
ACTTGCTGGTGACGTCTTGAGCTTT
LOC_Os08g39970
Os.19508.1.S1_at--382--3631Chr08:25192283..25192307 (25 bp)
CTTGAGCTTTAGAACTGCAGGCACT
LOC_Os08g39970
Os.19508.1.S1_at--890--9791Chr08:25192307..25192331 (25 bp)
TAACTGGATACCCACTTCAGACGGT
LOC_Os08g39970
Os.19508.1.S1_at--842--6411Chr08:25192428..25192452 (25 bp)
GATCTCCATATCTTGTATTGTTGCA
LOC_Os08g39970
Os.19508.1.S1_at--620--2251Chr08:25192555..25192579 (25 bp)
AAATTATTTGCTTCTGTGCCATCCG
LOC_Os08g39970
Os.19508.1.S1_at--360--71Chr08:25192593..25192617 (25 bp)
ATTGCGGCACTGTACAGTATGCAGC
LOC_Os08g39970
Os.19508.1.S1_at--878--1651Chr08:25192615..25192639 (25 bp)
AGCGCGCTATCCTGTATCAAGAAAA
LOC_Os08g39970
Target Sequence 
GACTTGACGAAGCATCTGATGGTGAAAATGAAGATATTGTGCTCGTTGCAAGCCAACTAGGTACTACCGTTGCATGACAT
CGGTGGTCATGGCATCACTTGCTGGTGACGTCTTGAGCTTTAGAACTGCAGGCACTAACTGGATACCCACTTCAGACGGT
GGGTGAAGATGGAAACTCATGTGAAGAATGCAAGGTCGGCCAGATATATTGGTCGACATGAATTGTGAATTTGTGGTTGG
AATATATATTGTTAGAGATCTCCATATCTTGTATTGTTGCAATGGTATTTTCTTTGCAAATGTAGAGATAACTGCCCTAA
AAATAGAGCGTAGATGAAACCCCCTTTCTCCTTCAGAAATGGGGACATAAATTAGTAGGTTGTAAATTATTTGCTTCTGT
GCCATCCGTGCCTGCAAAGAAATTGCGGCACTGTACAGTATGCAGCGCGCTATCCTGTATCAAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis