Browse Element(s) Details


Os.19597.1.S1_at

Description gb:CR290823
DB_XREF= gi:44677389
DB_XREF=CR290823
CLONE=p717a08p3
TID=Os.19597.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19597 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g018103/11SAR DNA-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01780Os.52594.1.S1_at4/118+464852..466593AUX/IAA family protein, expressed
LOC_Os08g01794Os.15478.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794OsAffx.16781.1.S1_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.15478.1.S1_x_at11/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01794Os.33350.3.S1_x_at1/118+469069..476631Bromodomain containing protein, expressed
LOC_Os08g01810OsAffx.16782.1.S1_at11/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01810Os.19597.1.S1_at3/118+483701..485989SAR DNA-binding protein, putative
LOC_Os08g01820OsAffx.28983.1.S1_at11/118+487336..488558hypothetical protein
LOC_Os08g01820Os.38109.1.S1_at1/118+487336..488558hypothetical protein
LOC_Os08g01830Os.56382.1.S1_at11/118+490595..493672Protein kinase domain containing protein, expressed
LOC_Os08g01840Os.7406.1.S1_at11/118+507410..511930survival motor neuron domain containing 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19597.1.S1_at--1049--3091Chr08:483986..484125 (25 bp)
GAACCTTCCCGAGCTTTTTGGAGAT
LOC_Os08g01810
Os.19597.1.S1_at--568--10651Chr08:483981..484120 (25 bp)
TTCCCGAGCTTTTTGGAGATGACTA
LOC_Os08g01810
Os.19597.1.S1_at--281--10832Chr08:483949..483973 (25 bp)
TTGGTGGATGATGCGCCTAAATATA
LOC_Os08g01810
Os.19597.1.S1_at--958--4731Chr06:14601236..14601260 (25 bp)
GCTGAACGCATATACGACGAGGCTC
NONE
Os.19597.1.S1_at--1143--1831Chr06:14601231..14601255 (25 bp)
ACGCATATACGACGAGGCTCAACAA
NONE
Os.19597.1.S1_at--643--2211NONE
ACAAGCGCTGATGCATGCGCAGCCA
NONE
Os.19597.1.S1_at--792--6111NONE
GAGTGTTTGGTTGGTATGTTTACTA
NONE
Os.19597.1.S1_at--493--7411Chr08:483654..483681 (25 bp)
GTGATTTGATCACTGTACTCTTGTG
NONE
Os.19597.1.S1_at--808--3331NONE
CACTGTACTCTTGTGTATTCTCAAT
NONE
Os.19597.1.S1_at--412--9591NONE
TCTTGTGTATTCTCAATTACTGGCA
NONE
Os.19597.1.S1_at--259--151NONE
ATTACTGGCATTTCAGACTGAGATG
NONE
Target Sequence 
GAACCTTCCCGAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGCGCCTAAATATAAAGGTATATTCCGGAAGT
TCTCTTGCTTGAGGGCTTATGCAGANATGGTGCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTA
GTCACGGCAGCTGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAAACAAGAGTA
ATACTGTTCTTACTATGCTCCCAANGCGTCCAGCTGGGCTGCACCTGCATGCCCNGGTGTTTGATGCAGACATTAAGAGT
GTTTGGTTGGTATGTTTACTATGNCACCCAACTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTT
CAGACTGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis