Browse Element(s) Details


Os.19628.1.S1_a_at

Description gb:AK121511.1
DB_XREF= gi:37991134
TID=Os.19628.1
CNT=48
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.19628 (NCBI UniGene Cluster)
UG_TITLE=3-methylcrotonyl CoA carboxylase biotin-containing subunit mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023O13, full insert sequence.
FL= gb:AK121511.1 gb:AK061906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4125011/11Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41220Os.6233.1.S1_at11/1112+25525213..25527494Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41240NANA12+25539357..25540479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41250Os.19628.1.S1_a_at11/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41250OsAffx.8200.1.S1_at1/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41260Os.56254.1.S1_at11/1112+25549612..25552790protein kinase, putative, expressed
LOC_Os12g41270OsAffx.7656.1.S1_x_at10/1112+25559004..25564343Protein kinase domain containing protein
LOC_Os12g41280OsAffx.19542.3.S1_x_at3/1112+25565849..25569757retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41290Os.10023.1.S1_at8/1112+25571379..25578466Spc97/Spc98 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006552biological_processleucine catabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009933biological_processmeristem organization
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003989molecular_functionacetyl-CoA carboxylase activity
GO:0004485molecular_functionmethylcrotonoyl-CoA carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19628.1.S1_a_at--242--6011Chr12:25547478..25547502 (25 bp)
GAGAGCTGAGCAGTCACCTGATGAC
LOC_Os12g41250
Os.19628.1.S1_a_at--230--8871Chr12:25547496..25547520 (25 bp)
TGATGACAGTTCTCAACCTAGCGCT
LOC_Os12g41250
Os.19628.1.S1_a_at--785--3771Chr12:25547523..25547547 (25 bp)
CTCTGAGGCGAGGTCACATCCAAAG
LOC_Os12g41250
Os.19628.1.S1_a_at--169--2911Chr12:25547618..25547642 (25 bp)
AAGGTCAGCCTGTCATGGTTATGGA
LOC_Os12g41250
Os.19628.1.S1_a_at--297--9011Chr12:25547760..25547784 (25 bp)
TGAAGGCGCCTTGTGCCGGATATGT
LOC_Os12g41250
Os.19628.1.S1_a_at--203--8311Chr12:25547797..25547821 (25 bp)
GGCTACTGCCGGACAACAAGTTTTT
LOC_Os12g41250
Os.19628.1.S1_a_at--1129--1991Chr12:25547823..25547847 (25 bp)
ACTCTAGTGTCCTTTTCACCGTGAA
LOC_Os12g41250
Os.19628.1.S1_a_at--298--6051Chr12:25548094..25548118 (25 bp)
GAGATTCACGACCTGTACAGCTCAA
LOC_Os12g41250
Os.19628.1.S1_a_at--768--4831Chr12:25548113..25548137 (25 bp)
GCTCAATTCACAGACGCTTCATAAG
LOC_Os12g41250
Os.19628.1.S1_a_at--674--351Chr12:25548221..25548245 (25 bp)
ATAAGCAACGGGTTCATCTGTGTGA
LOC_Os12g41250
Os.19628.1.S1_a_at--713--4271Chr12:25548277..25548301 (25 bp)
CCTGTTGTTGTTGTCGCAAACCTGA
LOC_Os12g41250
Target Sequence 
GAGAGCTGAGCAGTCACCTGATGACAGTTCTCAACCTAGCGCTTCCTCTGAGGCGAGGTCACATCCAAAGGGGAGTGTTT
TGGCACCAATGGCTGGTCTGGTTGTAAAGGTTTTGCTTAAAGACGGGGCACGGGTGGAGGAAGGTCAGCCTGTCATGGTT
ATGGAAGCAATGAAGATGGAGCATGTTGTGAAGGCGCCTTGTGCCGGATATGTGGAAGGGCTGAAGGCTACTGCCGGACA
ACAAGTTTTTGACTCTAGTGTCCTTTTCACCGTGAAGGAGAACAAGCCAAATTGAGAAACCCAGGCAGAGATTCACGACC
TGTACAGCTCAATTCACAGACGCTTCATAAGTTGGCTGATGATGCTGCCGGCCGTCCAAAAGCAAGCAAATAATAAGCGA
CAACATCGAGTTCACAACACAAAAGCAAGCAAAAATAAGCAACGGGTTCATCTGTGTGAATAAATTAGTTGACGAGCTCC
CAACCCACCCCCTGTTGTTGTTGTCGCAAACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19628.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis