Browse Element(s) Details


Os.19629.1.S1_x_at

Description gb:AK073486.1
DB_XREF= gi:32983509
TID=Os.19629.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19629 (NCBI UniGene Cluster)
UG_TITLE=Clone Osh16 unknown protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043N20, full insert sequence.
FL= gb:AK073486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0720011/11protein-O-fucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19629.1.S1_x_at--1160--3091Chr02:3704822..3704846 (25 bp)
AATAGCTTCTCAACATTTTCCAACC
LOC_Os02g07200
Os.19629.1.S1_x_at--179--10391Chr02:3704837..3704861 (25 bp)
TTTTCCAACCTTGTGGTGCTGTCAA
LOC_Os02g07200
Os.19629.1.S1_x_at--94--1471Chr02:3704907..3704931 (25 bp)
AGAATGTCGGGCTTTCATCCTATGC
LOC_Os02g07200
Os.19629.1.S1_x_at--1032--10391Chr02:3704940..3704964 (25 bp)
TTATTGGAGACGATGGCGGGCCACA
LOC_Os02g07200
Os.19629.1.S1_x_at--151--6511Chr02:3704978..3705002 (25 bp)
GATATGTCAGACACAAGCCTCCAAA
LOC_Os02g07200
Os.19629.1.S1_x_at--668--5451Chr02:3705015..3705039 (25 bp)
GAACGAACAATATCTCATGCCACTG
LOC_Os02g07200
Os.19629.1.S1_x_at--252--1471Chr02:3705129..3705153 (25 bp)
AGAAGGTTGATATTGGCTGCCACAC
LOC_Os02g07200
Os.19629.1.S1_x_at--536--8331Chr02:3705143..3705167 (25 bp)
GGCTGCCACACTTGAGAGAGACTTT
LOC_Os02g07200
Os.19629.1.S1_x_at--1039--10811Chr02:3705177..3705201 (25 bp)
TTGTCTGCAGACCTTTGTGAGTGTA
LOC_Os02g07200
Os.19629.1.S1_x_at--5--8831Chr02:3705266..3705290 (25 bp)
TGTTGTGTGTTACTTTGTCTTCCTC
LOC_Os02g07200
Os.19629.1.S1_x_at--609--8691Chr02:3705281..3705305 (25 bp)
TGTCTTCCTCCGTAACTTTTAATGT
LOC_Os02g07200
Target Sequence 
AATAGCTTCTCAACATTTTCCAACCTTGTGGTGCTGTCAAGAACACAAAGGCTATATAACATGGGAGAGGCAAGCTCATG
TGGAGAGAATGTCGGGCTTTCATCCTATGCCTACAATGTTATTGGAGACGATGGCGGGCCACAGAGATGGATGACAGATA
TGTCAGACACAAGCCTCCAAAACTTGAGTTACGGAACGAACAATATCTCATGCCACTGACTTATGACATAAAACACTTGA
CTGAACACGATCACACACACAAGGATAATTCTTGGGAGAATTTTAGCTACAAACAGAGGAACATGTTAGAAGGTTGATAT
TGGCTGCCACACTTGAGAGAGACTTTGGCCAAGAATTGTCTGCAGACCTTTGTGAGTGTATACAAAAACTGTTCTCTGAA
GAACATTGACTTGTATTGAACAGTCTTTAGTTTGTAAAGTTAAATGTTGTGTGTTACTTTGTCTTCCTCCGTAACTTTTA
ATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19629.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis