Browse Element(s) Details


Os.19814.1.S1_at

Description gb:CB662491
DB_XREF= gi:29666216
DB_XREF=OSJNEd06I24.f
CLONE=OSJNEd06I24
TID=Os.19814.1
CNT=15
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19814 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:Q9MA63 (A.thaliana) Y350_ARATH Hypothetical protein At3g05500
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0594011/11Rubber elongation factor protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os05g05930NANA5+2947630..2948211hypothetical protein
LOC_Os05g05940Os.19814.1.S1_at11/115+2948872..2950773Rubber elongation factor protein containing protein, expressed
LOC_Os05g05950Os.9224.1.S1_at11/115+2951707..2956067chloroplast outer membrane protein, putative, expressed
LOC_Os05g05960OsAffx.10645.1.S1_at2/115+2961018..2961335hypothetical protein
LOC_Os05g05970OsAffx.26751.1.S1_at11/115+2963025..2963408hypothetical protein
LOC_Os05g05980OsAffx.14563.1.S1_at10/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05980OsAffx.26752.1.A1_at1/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19814.1.S1_at--697--9851Chr05:2949319..2949343 (25 bp)
TACAACACGGCAGTGGCCGACGGCG
LOC_Os05g05940
Os.19814.1.S1_at--350--6331Chr05:2949185..2949209 (25 bp)
GATGCAGCCCATCCCGTCGCAGTAA
LOC_Os05g05940
Os.19814.1.S1_at--387--3351Chr05:2949150..2949174 (25 bp)
CACGTATTCTTCACCGTGTGGGTGG
LOC_Os05g05940
Os.19814.1.S1_at--152--3371Chr05:2949139..2949163 (25 bp)
CACCGTGTGGGTGGCCAAAATACTA
LOC_Os05g05940
Os.19814.1.S1_at--585--3091Chr05:2949121..2949145 (25 bp)
AATACTACTTAGAACTTAGCTTTGG
LOC_Os05g05940
Os.19814.1.S1_at--506--2051Chr05:2949108..2949132 (25 bp)
ACTTAGCTTTGGATGAATTATGGAA
LOC_Os05g05940
Os.19814.1.S1_at--460--151Chr05:2949065..2949089 (25 bp)
ATTAGTAATGTGTGATCGCCTTGTT
LOC_Os05g05940
Os.19814.1.S1_at--101--6391Chr05:2949052..2949076 (25 bp)
GATCGCCTTGTTGGGTCTTGTTAAT
LOC_Os05g05940
Os.19814.1.S1_at--26--6631Chr05:2949043..2949067 (25 bp)
GTTGGGTCTTGTTAATTGCTGCAAA
LOC_Os05g05940
Os.19814.1.S1_at--697--4751Chr05:2949026..2949050 (25 bp)
GCTGCAAATTGGTCGTGTAATCCTT
LOC_Os05g05940
Os.19814.1.S1_at--1029--7791Chr05:2949016..2949040 (25 bp)
GGTCGTGTAATCCTTGTGTTATGTG
LOC_Os05g05940
Target Sequence 
TACAACACGGCAGTGGCCGACGGCGCCAAGCGCGGCAGCGCCGTCGCCACCTACCTCCCGCTCGTCCCCACCGAGCGCCT
CTCCAGGGTGTTCGGCTACCCGCTCGCCGACGCCGCCACCTCGCCGGCGCCGGAGATGCAGCCCATCCCGTCGCAGTAAG
CCCACCCCACACGTATTCTTCACCGTGTGGGTGGCCAAAATACTACTTAGAACTTAGCTTTGGATGAATTATGGAATTAT
TATTATCTTGTACTATTAGTAATGTGTGATCGCCTTGTTGGGTCTTGTTAATTGCTGCAAATTGGTCGTGTAATCCTTGT
GTTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis