Browse Element(s) Details


Os.19942.1.S1_at

Description gb:AK121452.1
DB_XREF= gi:37991075
TID=Os.19942.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142L20, full insert sequence.
FL= gb:AK121452.1 gb:AK102707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1462011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14580Os.6287.1.S1_at10/118+8761383..8765231HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g14590OsAffx.5816.1.S1_at11/118+8767983..8768448hypothetical protein
LOC_Os08g14600OsAffx.5817.1.S1_at11/118+8775521..8776513expressed protein
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein
LOC_Os08g14630NANA8+8794611..8795461hypothetical protein
LOC_Os08g14640Os.22829.1.S1_at11/118+8796477..8800537expressed protein
LOC_Os08g14650OsAffx.29199.1.S1_at10/118+8802883..8804027hypothetical protein
LOC_Os08g14650OsAffx.24469.1.S1_x_at1/118+8802883..8804027hypothetical protein
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed
LOC_Os08g14670NANA8+8816273..8824399transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19942.1.S1_at--961--9311Chr08:8789888..8789912 (25 bp)
TCCCTTTGAGGATGCGCCTTGTGAA
LOC_Os08g14620
Os.19942.1.S1_at--1101--4671Chr08:8789855..8789879 (25 bp)
GCGGAACATTGCTCTCAGTGATGAT
LOC_Os08g14620
Os.19942.1.S1_at--881--3371Chr08:8789802..8789826 (25 bp)
CAGCCGCTGAGCAATGTTACGTTCA
LOC_Os08g14620
Os.19942.1.S1_at--792--9591Chr08:8789780..8789804 (25 bp)
TCATTGTTAAGCTTCCTGTGGACCC
LOC_Os08g14620
Os.19942.1.S1_at--48--8651Chr08:8789764..8789788 (25 bp)
TGTGGACCCAACTCTGCTAAATGTT
LOC_Os08g14620
Os.19942.1.S1_at--599--2991Chr08:8789745..8789769 (25 bp)
AATGTTTCACCCAAGGCTGTGCTGA
LOC_Os08g14620
Os.19942.1.S1_at--1039--3811Chr08:8789676..8789700 (25 bp)
CTGAAAGGACCTGCTGGACGTTTGA
LOC_Os08g14620
Os.19942.1.S1_at--870--5331Chr08:8789590..8789614 (25 bp)
GAAGTTTGCTTACCAAGGGCCATTT
LOC_Os08g14620
Os.19942.1.S1_at--517--1211Chr08:8789519..8789543 (25 bp)
AGTTTAATGAGGCTGGCCACACCTT
LOC_Os08g14620
Os.19942.1.S1_at--88--3891Chr08:8789478..8789502 (25 bp)
CTGTGCATCTAATTGGTACCTTCTT
LOC_Os08g14620
Os.19942.1.S1_at--155--8791Chr08:8789442..8789466 (25 bp)
TGTTACTTTACCCTTGATTTGTTCG
LOC_Os08g14620
Target Sequence 
TCCCTTTGAGGATGCGCCTTGTGAAGCGACATAGCGGAACATTGCTCTCAGTGATGATTCAATACGCATCAAACCCAATG
TTGCCACAGCCGCTGAGCAATGTTACGTTCATTGTTAAGCTTCCTGTGGACCCAACTCTGCTAAATGTTTCACCCAAGGC
TGTGCTGAATCGGGCAGAGAGGGAGCTCAGGTGGCACATCCCAGACATTCCCCTGAAAGGACCTGCTGGACGTTTGAGGG
CTCGGATGCCTGTAGATCAGGACTCAAAGGATGGTGAGCTAGAGGTTGTTGGGATGGTGAAGTTTGCTTACCAAGGGCCA
TTTACATTGTCTGGCATCAAACTNTGCCCAGCCACTGATGGCACGGCTCAGTTTAATGAGGCTGGCCACACCTTCTCCAG
TGGGAGTTATCTGTGCATCTAATTGGTACCTTCTTTGTATTGTAGTTGTTACTTTACCCTTGATTTGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis