Browse Element(s) Details


Os.20102.1.S1_at

Description gb:BM038345
DB_XREF= gi:16753966
DB_XREF=U007D01
CLONE=U007D01
TID=Os.20102.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20102 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g119406/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11890OsAffx.18809.1.S1_at11/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11890Os.31112.3.S1_at1/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11900OsAffx.18810.1.S1_at10/1111+6599820..6601191hypothetical protein
LOC_Os11g11920Os.56301.1.S1_at11/1111+6601895..6611496Nitrate-induced NOI protein, expressed
LOC_Os11g11930NANA11+6613654..6613966hypothetical protein
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11950Os.21562.1.S1_at5/1111+6627427..6630131NB-ARC domain containing protein, expressed
LOC_Os11g11960OsAffx.30939.2.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S1_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11960Os.49400.1.S2_s_at11/1111+6631063..6636603NBS-LRR type disease resistance protein, putative, expressed
LOC_Os11g11970OsAffx.7086.1.S1_at11/1111+6641902..6642609expressed protein
LOC_Os11g11980Os.11916.1.S1_at10/1111+6644543..6645681expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20102.1.S1_at--561--8031Chr11:6622329..6622354 (25 bp)
GGAGTGGTTTTCAGTGCTCTTACTC
LOC_Os11g11940
Os.20102.1.S1_at--51--8591Chr11:6622333..6622358 (25 bp)
TGGTTTTCAGTGCTCTTACTCTCTA
LOC_Os11g11940
Os.20102.1.S1_at--1120--10371NONE
TTTTCAGTGCTCTTACTCTCTAACT
NONE
Os.20102.1.S1_at--648--7311Chr11:6622343..6622367 (25 bp)
GTGCTCTTACTCTCTAACTGATCAA
LOC_Os11g11940
Os.20102.1.S1_at--1031--4811Chr11:6622345..6622369 (25 bp)
GCTCTTACTCTCTAACTGATCAACT
LOC_Os11g11940
Os.20102.1.S1_at--557--9911Chr11:6622350..6622374 (25 bp)
TACTCTCTAACTGATCAACTGTGAA
LOC_Os11g11940
Os.20102.1.S1_at--899--3731Chr11:6622356..6622408 (25 bp)
CTAACTGATCAACTGTGAAATTGGA
LOC_Os11g11940
Os.20102.1.S1_at--1084--3811NONE
CTGTGAAATTGGAAGTACACTTGGA
NONE
Os.20102.1.S1_at--180--6651NONE
GTTGTTCTCTTGTTGCTAGTGCTTG
NONE
Os.20102.1.S1_at--305--6731NONE
GTTCTCTTGTTGCTAGTGCTTGTAA
NONE
Os.20102.1.S1_at--1134--3751NONE
CTCTTGTTGCTAGTGCTTGTAATTG
NONE
Target Sequence 
GGAGTGGTTTTCAGTGCTCTTACTCTCTAACTGATCAACTGTGAAATTGGAAGTACACTTGGAAGAGTTGTTTGTGGATT
GTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGG
CTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATT
GCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCCAAGGTTTGTCTTTCTTC
GATTCAAATCACTGGACATCTGTCTGGTCAAAATGAAGTTCACCATGTTGTTCTCTTGTTGCTAGTGCTTGTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis