Browse Element(s) Details


Os.20160.1.S1_at

Description gb:AK073441.1
DB_XREF= gi:32983464
TID=Os.20160.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AMP-binding protein (OSJNBb0043P23.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044E24, full insert sequence.
FL= gb:AK073441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6285011/11AMP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009698biological_processphenylpropanoid metabolism
GO:0030497biological_processfatty acid elongation
GO:0009536cellular_componentplastid
GO:0004315molecular_function3-oxoacyl-[acyl-carrier protein] synthase activity
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20160.1.S1_at--1103--271Chr03:35489097..35489389 (25 bp)
ATAGTTGTTGTTGGCCAGGACAAGC
LOC_Os03g62850
Os.20160.1.S1_at--682--5191Chr03:35489069..35489093 (25 bp)
GAATTGGTGCTCTTATCGTTCCCAA
LOC_Os03g62850
Os.20160.1.S1_at--924--8551Chr03:35488597..35488620 (24 bp)
TGGATGGTGGATTGTTCCTTCCAAA
LOC_Os03g62850
Os.20160.1.S1_at--855--3171Chr03:35488574..35488598 (25 bp)
AATTGGCCCGATTCTAATTGTCGAT
LOC_Os03g62850
Os.20160.1.S1_at--822--4811Chr03:35488441..35488465 (25 bp)
GCTAACACCCACTTTGAAATTACGG
LOC_Os03g62850
Os.20160.1.S1_at--220--5651Chr03:35488337..35488361 (25 bp)
GACAGTAGTTTGCATTTTCTTTGCC
LOC_Os03g62850
Os.20160.1.S1_at--197--3691Chr03:35488319..35488343 (25 bp)
CTTTGCCTTGGAAGACATCTCTTGA
LOC_Os03g62850
Os.20160.1.S1_at--930--6891Chr03:35488210..35488234 (25 bp)
GTATAAGCATTATTTCTCCTCCATA
LOC_Os03g62850
Os.20160.1.S1_at--41--9511Chr03:35488196..35488220 (25 bp)
TCTCCTCCATATCGATGTGATCTCA
LOC_Os03g62850
Os.20160.1.S1_at--858--451Chr03:35488177..35488201 (25 bp)
ATCTCACCACAATATATGCATCGGG
LOC_Os03g62850
Os.20160.1.S1_at--108--3891Chr03:35488129..35488153 (25 bp)
CTGTGTTACTGTGACTGAATTTCGT
LOC_Os03g62850
Target Sequence 
ATAGTTGTTGTTGGCCAGGACAAGCGGNGAATTGGTGCTCTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAA
AAGGAAGTCCATTCTTGATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTGCTATATGATGAGCTGAGAACTT
GGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACGGTGGATAATGGTTTGCTAACA
CCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGT
GAGCATGAGTACATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAGCTAGAACAT
ACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTTGCTGATTCAGTATGTATAAGCATTATTTC
TCCTCCATATCGATGTGATCTCACCACAATATATGCATCGGGAGGGACANNNNNNGNNNNNTNCACTGTGTTACTGTGAC
TGAATTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis