Browse Element(s) Details


Os.20203.1.S1_s_at

Description gb:AK069974.1
DB_XREF= gi:32979998
TID=Os.20203.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1046G12.16 (B1046G12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036M01, full insert sequence.
FL= gb:AK099171.1 gb:AK069974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10180Os.30696.1.S1_at10/111+5349307..5350409expressed protein
LOC_Os01g10190OsAffx.23182.1.S1_at11/111+5351403..5354507hypothetical protein
LOC_Os01g10200OsAffx.23183.1.S1_at11/111+5366204..5366693hypothetical protein
LOC_Os01g10210Os.20203.1.S1_s_at11/111+5370432..5371594expressed protein
LOC_Os01g10210Os.20203.1.S1_at11/111+5370432..5371594expressed protein
LOC_Os01g10219NANA1+5373117..5373358NA
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20203.1.S1_s_at--296--4091Chr01:5371192..5371216 (25 bp)
CGACGAGCTCAACCGGGACAAATAC
LOC_Os01g10210
Os.20203.1.S1_s_at--146--8151Chr01:5371207..5371231 (25 bp)
GGACAAATACTCTATCGCGGTCTGA
LOC_Os01g10210
Os.20203.1.S1_s_at--548--531Chr01:5371220..5371244 (25 bp)
ATCGCGGTCTGAGTGTTCGTCCGGT
LOC_Os01g10210
Os.20203.1.S1_s_at--606--7231Chr01:5371238..5371262 (25 bp)
GTCCGGTCCGTCGATCGATCGGTAC
LOC_Os01g10210
Os.20203.1.S1_s_at--873--2131Chr01:5371261..5371285 (25 bp)
ACAGTACACCAGTATATGCGCGGTT
LOC_Os01g10210
Os.20203.1.S1_s_at--681--9151Chr01:5371277..5371301 (25 bp)
TGCGCGGTTGCTGGTCAACTTTATA
LOC_Os01g10210
Os.20203.1.S1_s_at--388--10171Chr01:5371298..5371322 (25 bp)
TATACGTGAACTAATTTGGCTGCAA
LOC_Os01g10210
Os.20203.1.S1_s_at--629--5511Chr01:5371341..5371365 (25 bp)
GAAAATACACGAACTCTGTCGCCGT
LOC_Os01g10210
Os.20203.1.S1_s_at--670--8711Chr01:5371357..5371381 (25 bp)
TGTCGCCGTCTTCCGTATATATGTA
LOC_Os01g10210
Os.20203.1.S1_s_at--1005--6871Chr01:5371391..5371415 (25 bp)
GTATACCTACCTACGTATACGGTAT
LOC_Os01g10210
Os.20203.1.S1_s_at--829--1911Chr01:5371409..5371433 (25 bp)
ACGGTATACTGTGTTTGTACGTGCT
LOC_Os01g10210
Target Sequence 
CGACGAGCTCAACCGGGACAAATACTCTATCGCGGTCTGAGTGTTCGTCCGGTCCGTCGATCGATCGGTACAGTACACCA
GTATATGCGCGGTTGCTGGTCAACTTTATACGTGAACTAATTTGGCTGCAAAAACGTATATTGTTCGATGAAAATACACG
AACTCTGTCGCCGTCTTCCGTATATATGTACGTACCTACGTATACCTACCTACGTATACGGTATACTGTGTTTGTACGTG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20203.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis