Browse Element(s) Details


Os.20281.1.S1_at

Description gb:AK103856.1
DB_XREF= gi:32989065
TID=Os.20281.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative signal tranduction protein (OSJNBa0041P03.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148O10, full insert sequence.
FL= gb:AK103856.1 gb:AK059840.1 gb:AK060102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3525011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20281.1.S1_at--992--8771Chr10:18508705..18508729 (25 bp)
TGTTCCACCCGGAGGCGATTCAAGA
LOC_Os10g35250
Os.20281.1.S1_at--308--891Chr10:18508693..18508717 (25 bp)
AGGCGATTCAAGACCCGGGTACTCT
LOC_Os10g35250
Os.20281.1.S1_at--57--2351Chr10:18508658..18508682 (25 bp)
AAAGACCTGCTTACTCACAGCCATA
LOC_Os10g35250
Os.20281.1.S1_at--114--2491Chr10:18508610..18508634 (25 bp)
AACAGCCTCCATATGGTGCGCCGTC
LOC_Os10g35250
Os.20281.1.S1_at--668--9311Chr10:18508522..18508546 (25 bp)
TCCCAACCATGACTATGGCCAACAA
LOC_Os10g35250
Os.20281.1.S1_at--295--6231Chr10:18508484..18508508 (25 bp)
GATGGCGCGGGCAGTACTACAATCC
LOC_Os10g35250
Os.20281.1.S1_at--656--7011Chr10:18508471..18508495 (25 bp)
GTACTACAATCCACATCAGCCACAG
LOC_Os10g35250
Os.20281.1.S1_at--281--7031Chr10:18508414..18508438 (25 bp)
GTACAATGCCCAGGGTTCTTACCCT
LOC_Os10g35250
Os.20281.1.S1_at--317--9251Chr10:18508390..18508414 (25 bp)
TCCTCACCAGAGCAGCTACTACAGG
LOC_Os10g35250
Os.20281.1.S1_at--545--4851Chr10:18508376..18508400 (25 bp)
GCTACTACAGGCCTCAATGAGAGAT
LOC_Os10g35250
Os.20281.1.S1_at--777--211Chr10:18508241..18508265 (25 bp)
ATATCGATTGGTGTCAGGTTGGTTA
LOC_Os10g35250
Target Sequence 
TGTTCCACCCGGAGGCGATTCAAGACCCGGGTACTCTCAGCCCGAGCAAAGACCTGCTTACTCACAGCCATACCCGCCCT
ATGGCGCGCCACCGCAACAGCCTCCATATGGTGCGCCGTCGCAACAGCCACCTTATGGCGCGCCCCACCCTGGTCACTAC
CAACAGCCACCACACCAGCAACCTCCCAACCATGACTATGGCCAACAAGCATATCCTGGAGGATGGCGCGGGCAGTACTA
CAATCCACATCAGCCACAGCCGCAGCCACAGCCGCCATATCCTCAGCCACCGTACAATGCCCAGGGTTCTTACCCTCCTC
ACCAGAGCAGCTACTACAGGCCTCAATGAGAGATGGTTTTGGGATGTGGCAGAACATGTTTGTGTGCCTCTTTTTATTTT
TCTTCAGACTGCGCATATGTGAATTACGTTTTATGGTGTACTGCTTACAAAGTGAGGTGGTGTAATATCGATTGGTGTCA
GGTTGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis