Browse Element(s) Details


Os.20283.1.S1_at

Description gb:AK099941.1
DB_XREF= gi:32985150
TID=Os.20283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013121A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013121A05, full insert sequence.
FL= gb:AK099941.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g499009/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49870OsAffx.3052.1.S1_at11/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49870Os.29800.1.S1_x_at2/114+29511727..29513397Poly polymerase central domain containing protein
LOC_Os04g49880OsAffx.14351.1.S1_x_at11/114+29520965..29521246hypothetical protein
LOC_Os04g49890Os.27657.1.A1_at11/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49890Os.24644.1.S1_at9/114+29523656..29531150ABC transporter family protein, expressed
LOC_Os04g49900Os.20283.1.S1_at9/114+29535851..29543031ABC transporter family protein, expressed
LOC_Os04g49910Os.45957.4.S1_x_at5/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49910Os.45957.3.S1_x_at2/114+29545697..29550504retrotransposon protein, putative, unclassified
LOC_Os04g49920OsAffx.26670.2.S1_at11/114+29551081..29554672hypothetical protein
LOC_Os04g49930OsAffx.26670.1.S1_at11/114+29557342..29564508hypothetical protein
LOC_Os04g49930Os.10719.1.S1_at1/114+29557342..29564508hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20283.1.S1_at--834--3491Chr04:29542401..29542425 (25 bp)
CATGGGACAGCGACAACTATTTTGT
LOC_Os04g49900
Os.20283.1.S1_at--171--1251Chr04:29542485..29542509 (25 bp)
AGTTGACTCTGCTACAGACCGGATT
LOC_Os04g49900
Os.20283.1.S1_at--1150--10731Chr04:29542542..29542566 (25 bp)
TTGCACAGTGCTTGCAATTGCCCAT
LOC_Os04g49900
Os.20283.1.S1_at--1079--6491Chr04:29542585..29542609 (25 bp)
GATAGTGACCTTATTCTTGTTCTTG
LOC_Os04g49900
Os.20283.1.S1_at--1139--8111Chr04:29542749..29542773 (25 bp)
GGACTCTACATTCTCTAAGCTAACC
LOC_Os04g49900
Os.20283.1.S1_at--44--1351NONE
AGAGTACTCACAACAATCGCAGGAC
NONE
Os.20283.1.S1_at--364--8131NONE
GGACTTCAAGTCTTCAACGGCAATG
NONE
Os.20283.1.S1_at--163--5191Chr04:29542816..29542840 (25 bp)
GCAATGCACAGGATGGGTAGCTACT
LOC_Os04g49900
Os.20283.1.S1_at--361--7691Chr04:29542830..29542854 (25 bp)
GGGTAGCTACTAATTTTCCTGAAGA
LOC_Os04g49900
Os.20283.1.S1_at--744--5671Chr04:29542853..29542877 (25 bp)
GACATACTACATTCTACATGGCTAT
LOC_Os04g49900
Os.20283.1.S1_at--255--8271Chr04:29542927..29542951 (25 bp)
GGCAGGGAATTGCTTCGTAGTCCAA
LOC_Os04g49900
Target Sequence 
CATGGGACAGCGACAACTATTTTGTTTAGGCAGAATTCTCCTGAGGAAGAGCAAGATACTAGTCCTTGATGAGGCAACTG
CTTCAGTTGACTCTGCTACAGACCGGATTATTCAAGAGATAATTCGTCAAGAATTCAAAGATTGCACAGTGCTTGCAATT
GCCCATAGGATGAACACTGTTATTGATAGTGACCTTATTCTTGTTCTTGGTGAAGGTAGTATTTTAGAATACGACACCCC
CACCAAACTGCTCCAGAGAGAGGACTCTACATTCTCTAAGCTAACCAAAGAGTACTCACAACAATCGCAGGACTTCAAGT
CTTCAACGGCAATGCACAGGATGGGTAGCTACTAATTTTCCTGAAGACATACTACATTCTACATGGCTATATTCCCCACG
ACACACCTGAAGTATCCGCGCCACAGCAACTCAGCAAGGGGCAGGGAATTGCTTCGTAGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis