Browse Element(s) Details


Os.20322.1.S1_at

Description gb:AK109762.1
DB_XREF= gi:32994971
TID=Os.20322.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G11, full insert sequence.
FL= gb:AK109762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4466011/11Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44610Os.8437.1.S1_at11/116+26936183..26940027plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein
LOC_Os06g44680OsAffx.28104.1.S1_at11/116+26971932..26972545hypothetical protein
LOC_Os06g44690NANA6+26977694..26981024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g44700NANA6+26982446..26982774hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20322.1.S1_at--693--1271Chr06:26956988..26957057 (25 bp)
AGATCAGCAACTTCGTCCTGCCGCT
LOC_Os06g44660
Os.20322.1.S1_at--773--9171Chr06:26956955..26956994 (25 bp)
TGCCGCTGCCGAGGATGAAGCCGAT
LOC_Os06g44660
Os.20322.1.S1_at--543--7291Chr06:26956905..26956929 (25 bp)
GTGCCGGCCCCGACAAAGATGGTGC
LOC_Os06g44660
Os.20322.1.S1_at--781--2331Chr06:26956891..26956915 (25 bp)
AAAGATGGTGCCGATCCCGCCGAGT
LOC_Os06g44660
Os.20322.1.S1_at--507--6071Chr06:26956870..26956894 (25 bp)
GAGTTTGCCGCTGACGGATCCGGCC
LOC_Os06g44660
Os.20322.1.S1_at--103--1891Chr06:26956743..26956767 (25 bp)
ACGATGGCATGCGTGTTCGGTTATT
LOC_Os06g44660
Os.20322.1.S1_at--932--3051Chr06:26956702..26956726 (25 bp)
AATCTGCTCTATTTTACCGGTTACG
LOC_Os06g44660
Os.20322.1.S1_at--992--351Chr06:26956673..26956697 (25 bp)
ATAATTAATCTACAGGTGCATCCTA
LOC_Os06g44660
Os.20322.1.S1_at--146--7331Chr06:26956658..26956682 (25 bp)
GTGCATCCTACGTTTTTAGCGCATA
LOC_Os06g44660
Os.20322.1.S1_at--250--10451Chr06:26956643..26956667 (25 bp)
TTAGCGCATATGATCGTAGTAGTTG
LOC_Os06g44660
Os.20322.1.S1_at--482--6951Chr06:26956566..26956590 (25 bp)
GTAGAGACTTGTAATCGCCGGAGAA
LOC_Os06g44660
Target Sequence 
AGATCAGCAACTTCGTCCTGCCGCTGCCGAGGATGAAGCCGATGGCGATCGCGCCGACCCCGGCGCCGGTGCCGGCCCCG
ACAAAGATGGTGCCGATCCCGCCGAGTTTGCCGCTGACGGATCCGGCCGATGAGGACGGCGACGAGGCGCCGGCCGCCGC
GCCGGCGCCGTCGCATGGCAACGCGGTGAAGGTGATGAGTTGGTGGTCAGGCCTTGGCGTGCTCGTGGGGACGATGGCAT
GCGTGTTCGGTTATTTGTAGGTTAACTAATTAATCTGCTCTATTTTACCGGTTACGTTATATAATTAATCTACAGGTGCA
TCCTACGTTTTTAGCGCATATGATCGTAGTAGTTGAATTTGAAGAAACAGTTCTCTTTTTTTTTGTCCCATTTTTTGTTG
TTGTGGAGTAGAGACTTGTAATCGCCGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis