Browse Element(s) Details


Os.20347.1.S1_at

Description gb:AK108682.1
DB_XREF= gi:32993891
TID=Os.20347.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B07, full insert sequence.
FL= gb:AK108682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g499108/11expressed protein
LOC_Os04g319401/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49850OsAffx.10048.1.S1_x_at1/115+28522656..28526918retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g49860OsAffx.10929.1.S1_x_at2/115+28528717..28529506Histone H2B, putative, expressed
LOC_Os05g49870NANA5+28530478..28533304retrotransposon protein, putative, unclassified
LOC_Os05g49880Os.11139.1.S1_at11/115+28534384..28538305Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g49890Os.8152.1.S1_at11/115+28539165..28541469GTP-binding nuclear protein Ran/TC4, putative, expressed
LOC_Os05g49900Os.53085.1.S1_at11/115+28541952..28544278Fatty acid elongase, putative, expressed
LOC_Os05g49910Os.57367.1.S1_x_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.57367.1.S1_at11/115+28545588..28548920expressed protein
LOC_Os05g49910Os.20347.1.S1_at8/115+28545588..28548920expressed protein
LOC_Os05g49920OsAffx.27388.1.S1_at11/115+28549790..28552533pentatricopeptide, putative, expressed
LOC_Os05g49930Os.47898.1.A1_at11/115+28557003..28558717GRAS family transcription factor containing protein, expressed
LOC_Os05g49940Os.27218.1.A1_at11/115+28564193..28564952expressed protein
LOC_Os05g49950NANA5+28566615..28567103hypothetical protein
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20347.1.S1_at--361--1771Chr05:28545988..28546012 (25 bp)
ACCTGATTTCCGAGTATATCTTCGA
LOC_Os05g49910
Os.20347.1.S1_at--700--9571Chr05:28545970..28545994 (25 bp)
TCTTCGATGTTTCCTGATTGACTTG
LOC_Os05g49910
Os.20347.1.S1_at--867--6071Chr05:28545944..28545968 (25 bp)
GAGTTTATCCTCTATGTTTCCTGCT
LOC_Os05g49910
Os.20347.1.S1_at--568--9871Chr05:28545911..28545935 (25 bp)
TACATGGCTCATGACTGCAGGTGAC
LOC_Os05g49910
Os.20347.1.S1_at--445--4651Chr05:28545801..28545825 (25 bp)
GCGTCCTTTCCGATCAGAATGTGTA
LOC_Os05g49910
Os.20347.1.S1_at--342--5231Chr05:28545730..28545754 (25 bp)
GAATATGTTGTTTCACACTCACCAG
LOC_Os05g49910
Os.20347.1.S1_at--626--10371Chr05:28545675..28545699 (25 bp)
TTTTAGGTGACCATCATCGTCAGGT
LOC_Os05g49910
Os.20347.1.S1_at--727--232Chr04:18944526..18944655 (24 bp)
ATATTTTCGCACAACCTGATGATGA
LOC_Os04g31940
Os.20347.1.S1_at--1038--9231Chr05:28545549..28545573 (25 bp)
TCCATTGCTTTTGTGCTTGAACTAG
NONE
Os.20347.1.S1_at--1011--8951NONE
TGACACTTCATAGTCGAGCACTGCT
NONE
Os.20347.1.S1_at--1088--4072Chr08:11056271..11056292 (22 bp)
CGAGCACTGCTCCACGTATTAAAAG
NONE
Target Sequence 
ACCTGATTTCCGAGTATATCTTCGATGTTTCCTGATTGACTTGTGAGTTTATCCTCTATGTTTCCTGCTTTTAGGATTAC
ATGGCTCATGACTGCAGGTGACGAGGGTTGTGGCGTCCTTTCCGATCAGAATGTGTAACCTTCAAGTACTTGAAAACATG
AAAGAAGAACCGGAAGGTGGATTGAATATGTTGTTTCACACTCACCAGAAAAGGGCAGGNAACTTGTTGGGAATATTTTT
TTAGGTGACCATCATCGTCAGGTCNATAACTTGCTTGCAAGATGAAAGTAACATGATATCGATATCTATATATTTTCGCA
CAACCTGATGATGAGGCAAAGAAATTTGTGGATACGGGTAAAGTTCCATTGCTTTTGTGCTTGAACTAGTAATTAATCTG
ACACTTCATAGTCGAGCACTGCTCCACGTATTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis