Browse Element(s) Details


Os.20437.1.S1_at

Description gb:AK109917.1
DB_XREF= gi:32995126
TID=Os.20437.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0700A11.20 (P0700A11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D11, full insert sequence.
FL= gb:AK109917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g405507/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20437.1.S1_at--419--9651Chr01:23228392..23228416 (25 bp)
TCAGTCCGAGCGGAGGACCCAGCTG
LOC_Os01g40550
Os.20437.1.S1_at--107--971Chr01:23228379..23228403 (25 bp)
AGGACCCAGCTGTCGGCTAGAGAGA
LOC_Os01g40550
Os.20437.1.S1_at--1142--10171Chr01:23228009..23228033 (25 bp)
TATTCTCCCGGAACAACTAATTAAT
LOC_Os01g40550
Os.20437.1.S1_at--78--3091Chr01:23227983..23228007 (25 bp)
AATCAATTCACCCAGTATCATTCTC
LOC_Os01g40550
Os.20437.1.S1_at--987--1811Chr01:23227974..23227998 (25 bp)
ACCCAGTATCATTCTCACGTGTGTA
LOC_Os01g40550
Os.20437.1.S1_at--987--10571Chr01:23227963..23227987 (25 bp)
TTCTCACGTGTGTATCGATCGAAAT
LOC_Os01g40550
Os.20437.1.S1_at--479--9391Chr01:23227949..23227973 (25 bp)
TCGATCGAAATGCATGTATACTTGT
LOC_Os01g40550
Os.20437.1.S1_at--23--10691Chr01:23227898..23227922 (25 bp)
TTCCACTTATCTTTCTTTTGTACTA
NONE
Os.20437.1.S1_at--1107--6991Chr01:23227878..23227903 (25 bp)
GTACTATTGAGCTTACAACAAGCAT
NONE
Os.20437.1.S1_at--793--2451Chr01:23227861..23227886 (25 bp)
AACAAGCATCGATACAATGTCCGAA
NONE
Os.20437.1.S1_at--457--6471NONE
GATACAATGTCCGAAACCTTTAGGG
NONE
Target Sequence 
TCAGTCCGAGCGGAGGACCCAGCTGTCGGCTAGAGAGAAGAAAGAGGAGCCGCCCAAGGCTACAGCCCCCGCGGCGGCGC
CGCCGCAGCCGGCGGCGCGAGAGCGTCATGANGAGGAGGAGAAGGCCAGNGCCGNACACAAGGCGAGGCTGTCCCGGGAG
GCGGACAGGAGGATCGAGGCGGCGAGGGCGAGGCTGGCGGCGCAGCAGGCCGCCTCGAGGCCCGCGCCGGCGCCGGCGCC
GGAGCCGGAGAAGACGGCCGCGTGGTGGAAGGAGCGCNGCGGCGGAGGAAGGGATGAAGCTGNCGGAGGCCATCGGGAAG
AACAAGGAGGTGGTCGCCACGGCCGTCGCCGCGTTCGCACTCGGCGTCTTCGTCTCCACCAAACTATTCTCCCGGAACAA
CTAATTAATTAATCAATTCACCCAGTATCATTCTCACGTGTGTATCGATCGAAATGCATGTATACTTGTACTACATAATA
TGCATGAGTTAAAATTTCCACTTATCTTTCTTTTGTACTATTGAGCTTACAACAAGCATCGATACAATGTCCGAAACCTT
TAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis