Browse Element(s) Details


Os.20476.2.S1_a_at

Description gb:AK066120.1
DB_XREF= gi:32976138
TID=Os.20476.2
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055H16, full insert sequence.
FL= gb:AK066120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2766011/11ANTH domain containing protein, expressed
LOC_Os06g199601/11Aconitase family containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27650Os.5733.1.A1_s_at11/119+16821231..16824664Zinc finger, C2H2 type family protein, expressed
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003994molecular_functionaconitate hydratase activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20476.2.S1_a_at--741--8211Chr09:16835297..16835321 (25 bp)
GGAATCAGGTCTACCAGTATGACAT
LOC_Os09g27660
Os.20476.2.S1_a_at--894--2751Chr09:16835360..16835384 (25 bp)
AAGACTTCACGTGCTATGATCCAAG
LOC_Os09g27660
Os.20476.2.S1_a_at--152--9771Chr09:16835391..16835415 (25 bp)
TAAGTACTGGGCATATCTGGAGAAA
LOC_Os09g27660
Os.20476.2.S1_a_at--380--10431Chr09:16835442..16835466 (25 bp)
TTATGCTGAGAGTCTAGTTCCGATT
LOC_Os09g27660
Os.20476.2.S1_a_at--235--5951Chr09:16835477..16835501 (25 bp)
GAGAAGTCACTTCATTTTTTGTTAA
LOC_Os09g27660
Os.20476.2.S1_a_at--968--6252Chr09:16835689..16835713 (25 bp)
GATGTGGAGCCTTGCATTTCAGGCC
LOC_Os09g27660
Os.20476.2.S1_a_at--1136--2391Chr09:16836082..16836106 (25 bp)
AAACACATCAAATCCCAGCGTTATA
LOC_Os09g27660
Os.20476.2.S1_a_at--1008--351Chr09:16836104..16836128 (25 bp)
ATAATTGGTGCTGGCCTAGTCGCAA
LOC_Os09g27660
Os.20476.2.S1_a_at--549--8431Chr09:16836146..16836170 (25 bp)
GGCCTTGAGGTTTGCATGTTCGTTC
LOC_Os09g27660
Os.20476.2.S1_a_at--216--8671Chr09:16836197..16836221 (25 bp)
TGTGTTTGTGCGACTATAACCTCCC
LOC_Os09g27660
Os.20476.2.S1_a_at--50--351Chr09:16836212..16836236 (25 bp)
ATAACCTCCCTCTCTGTAAATATGT
LOC_Os09g27660
Target Sequence 
GGAATCAGGTCTACCAGTATGACATTCAAACCTGTAGAATGGAAAAGATAGCTTCAGGGGTTGAAGACTTCACGTGCTAT
GATCCAAGGAACAATAAGTACTGGGCATATCTGGAGAAAGAAGTAACGGATATGCATCTATTTAATTATGCTGAGAGTCT
AGTTCCGATTAGAGAATTTTGAGAAGTCACTTCATTTTTTGTTAAGATGTGGAGCCTTGCATTTCAGGCCCAAAGAGTCC
TCATGACCGTGTCCCTTTGAAGGAAATGAAATCAGATTGGCATGCTTGCCTGGACAGCAATTTCAAGNNNNNNNNNNNCA
ATATGCAGTTACACAAACACATCAAATCCCAGCGTTATAATTGGTGCTGGCCTAGTCGCAAAGAAAGCCTGTGAATTGGG
CCTTGAGGTTTGCATGTTCGTTCATATATGTAACTAGTGTATTGTGTCGTGTGTTTGTGCGACTATAACCTCCCTCTCTG
TAAATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20476.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis