Browse Element(s) Details


Os.20525.1.S1_at

Description gb:AK069014.1
DB_XREF= gi:32979038
TID=Os.20525.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, partial cds, clone: 15FPR003
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170A02, full insert sequence.
FL= gb:AK069014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0196011/11Kinesin light chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20525.1.S1_at--789--1991Chr02:536343..536367 (25 bp)
ACTCTCGGCGTCTACAGTAATTTGG
LOC_Os02g01960
Os.20525.1.S1_at--969--212Chr09:7146689..7146717 (23 bp)
ATTTGGCTGCAATCTACGATGCTAT
NONE
Os.20525.1.S1_at--1144--4971Chr02:535489..535512 (24 bp)
GCAGGGTTGAGGACGCCATTGAAAT
LOC_Os02g01960
Os.20525.1.S1_at--443--9431Chr02:535429..535453 (25 bp)
TCGGCACAGCAAACCCGGATGTCGA
LOC_Os02g01960
Os.20525.1.S1_at--43--9771Chr02:535393..535417 (25 bp)
TAAGGCTTGCGGAGCTTCTGAAGGA
LOC_Os02g01960
Os.20525.1.S1_at--174--9271Chr02:535337..535361 (25 bp)
TCGCTGGAAAACCTTTTCGTGACCA
LOC_Os02g01960
Os.20525.1.S1_at--395--7371Chr02:535319..535343 (25 bp)
GTGACCAACTCGCAGCGTGTTAAGA
LOC_Os02g01960
Os.20525.1.S1_at--893--1051Chr02:535280..535304 (25 bp)
AGGTGGTCCAACTTTGGCTTCAGGA
LOC_Os02g01960
Os.20525.1.S1_at--478--6291Chr02:535140..535164 (25 bp)
GATGATTGTGTTTGCCGTTTGAGAT
LOC_Os02g01960
Os.20525.1.S1_at--774--51Chr02:535104..535128 (25 bp)
ATTGTTGTGAATTACAGCTCGCTAT
LOC_Os02g01960
Os.20525.1.S1_at--110--3731Chr02:534974..534998 (25 bp)
CTACTGTTACCACCTGTGATGTGAT
LOC_Os02g01960
Target Sequence 
ACTCTCGGCGTCTACAGTAATTTGGCTGCAATCTACGATGCTATGGGCAGGGTTGAGGACGCCATTGAAATACTGGAACA
CGTACTTAAGGTGAGGGAAGAGAAGCTCGGCACAGCAAACCCGGATGTCGAGGACGAGAAGCTAAGGCTTGCGGAGCTTC
TGAAGGAGGCAGGGCGGTCCCGGAACAGGAAGCAGAAATCGCTGGAAAACCTTTTCGTGACCAACTCGCAGCGTGTTAAG
AAAGATGCTGGGAGGAGGTGGTCCAACTTTGGCTTCAGGAGTTGAGGAACACACCCTCACCTCACCTGGTGATGGAGGGT
GGCCTTTGTAACATAAAGGGAAGAAGAAGAAAAAACCACATGTGTAAAGGTGTTGTAGACTAGGAAGAATATGATGATGA
TTGTGTTTGCCGTTTGAGATTCTAAAATGCCATTGTTGTGAATTACAGCTCGCTATTATCTCGAGTATTTTTTTTTCTCC
CCCACAGTTTTAACTGGTTCTTAGTGTTGTATTTGGATAATGTATTGATTTGTGCTGGTGGTTGATGATGAATTAATACT
ANCTACTGTTACCACCTGTGATGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis