Browse Element(s) Details


Os.20530.1.S1_at

Description gb:AK102083.1
DB_XREF= gi:32987292
TID=Os.20530.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082L10, full insert sequence.
FL= gb:AK103178.1 gb:AK102083.1 gb:AK058527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4453011/11Dihydroxy-acid dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified
LOC_Os08g44510Os.27475.1.S1_at10/118+27858716..27866582gibberellin action negative regulator SPY, putative, expressed
LOC_Os08g44520Os.5480.1.S1_at11/118+27866953..27870725Peptidyl-prolyl cis-trans isomerase-like 1, putative, expressed
LOC_Os08g44530Os.20530.1.S1_at11/118+27872013..27876484Dihydroxy-acid dehydratase, putative, expressed
LOC_Os08g44540OsAffx.6136.1.S1_s_at11/118+27876837..27877725expressed protein
LOC_Os08g44550OsAffx.6137.1.S1_at11/118+27878459..27880475expressed protein
LOC_Os08g44560Os.52207.1.S1_at10/118+27881215..27887115expressed protein
LOC_Os08g44570NANA8+27893495..27899650retrotransposon protein, putative, unclassified
LOC_Os08g44580Os.28943.1.S1_x_at1/118+27900293..27903491retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20530.1.S1_at--983--7051Chr08:27875543..27875654 (25 bp)
GTCTTGGGAAGGAGTGTGCCCTGCT
LOC_Os08g44530
Os.20530.1.S1_at--387--7291Chr08:27875645..27875669 (25 bp)
GTGCCCTGCTGACCGATGGCAGATT
LOC_Os08g44530
Os.20530.1.S1_at--159--391Chr08:27875679..27875703 (25 bp)
ATCACATGGATTTGTTGTAGGCCAC
LOC_Os08g44530
Os.20530.1.S1_at--919--871Chr08:27875697..27875721 (25 bp)
AGGCCACATTTGTCCTGAAGCACAG
LOC_Os08g44530
Os.20530.1.S1_at--1047--3831Chr08:27875711..27875916 (25 bp)
CTGAAGCACAGGAGGGAGGTCCAAT
LOC_Os08g44530
Os.20530.1.S1_at--401--1931Chr08:27875900..27875923 (24 bp)
ACAGGAGGGAGGTCCAATTGGTCTT
LOC_Os08g44530
Os.20530.1.S1_at--476--5471Chr08:27876390..27876414 (25 bp)
GAACTGCTTGCTGAATAATCCATTG
LOC_Os08g44530
Os.20530.1.S1_at--1060--5231Chr08:27876402..27876426 (25 bp)
GAATAATCCATTGTCTGTTGCTGTG
LOC_Os08g44530
Os.20530.1.S1_at--1121--6671Chr08:27876418..27876442 (25 bp)
GTTGCTGTGTTGGACAAGTTTTGTC
LOC_Os08g44530
Os.20530.1.S1_at--872--6791Chr08:27876435..27876459 (25 bp)
GTTTTGTCTGAAAATCGCCTGATGC
LOC_Os08g44530
Os.20530.1.S1_at--1021--2271Chr08:27876446..27876470 (25 bp)
AAATCGCCTGATGCTTGAGAAAAAA
LOC_Os08g44530
Target Sequence 
GTCTTGGGAAGGAGTGTGCCCTGCTGACCGATGGCAGATTTTCTGGAGGATCACATGGATTTGTTGTAGGCCACATTTGT
CCTGAAGCACAGGAGGGAGGTCCAATTGGTCTTGTTCAAAACGGTGACAAAATTACCATTGATGTTGTGAAGAGAGTAAT
TGATGTTGAACTGACTGAAGCTGAGCTGGAAGAAAGACGGAGGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAG
CGCTTTGGAAGTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGATCCTGCTGCTGCTGCTC
GAGTAATAAAAAATAAAAAANAAAAAANAGGAGGAATAGGAGGAGGTTTTTGAGGAACAGTTTGCATGTAACAGTAGTTC
ATGGTGGTGNTTGGTGAAGGCTGATTGTGATGGTAGTTCCCTTCAATAAAATGGCAGTTTCCTAGGTGCTCAAGCAATGC
CGAGGGAACTGCTTGCTGAATAATCCATTGTCTGTTGCTGTGTTGGACAAGTTTTGTCTGAAAATCGCCTGATGCTTGAG
AAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis