Browse Element(s) Details


Os.20572.2.S1_at

Description gb:AK065109.1
DB_XREF= gi:32975127
TID=Os.20572.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001N21, full insert sequence.
FL= gb:AK065109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2262011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22600Os.56849.1.S1_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22600Os.56849.1.S1_x_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22620Os.20572.2.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22620Os.52722.1.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20572.2.S1_at--52--271Chr03:13014642..13014666 (25 bp)
ATATGGCCACCTCTGTTGAGTCCTA
LOC_Os03g22620
Os.20572.2.S1_at--511--4731Chr03:13014502..13014526 (25 bp)
GCTGTGAACCGAGTCGCCAACTTAG
LOC_Os03g22620
Os.20572.2.S1_at--326--9771Chr03:13014468..13014492 (25 bp)
TAATGTTCTTCTACCAAGGCAGCGA
LOC_Os03g22620
Os.20572.2.S1_at--804--371Chr03:13014406..13014430 (25 bp)
ATCAAGCAGCTGTTCGTCAAGCCTA
LOC_Os03g22620
Os.20572.2.S1_at--1014--151Chr03:13014365..13014389 (25 bp)
ATTATACTACACTCCATGTGCCAGC
LOC_Os03g22620
Os.20572.2.S1_at--789--771Chr03:13014350..13014374 (25 bp)
ATGTGCCAGCAGTGAATTCCTATAG
LOC_Os03g22620
Os.20572.2.S1_at--631--6431Chr03:13014305..13014329 (25 bp)
GATCTTGTCATCATGCAACGTCTTT
LOC_Os03g22620
Os.20572.2.S1_at--655--3131Chr03:13014241..13014265 (25 bp)
AATTAGGTGTTTGTGTCCTCGCAAA
LOC_Os03g22620
Os.20572.2.S1_at--126--6812Chr05:29663060..29663084 (25 bp)
GTTTTGTTGTCGTGCGTGGCAAACT
NONE
Os.20572.2.S1_at--866--4411Chr03:13014140..13014164 (25 bp)
GCCATGACTTGTGTAATTCTCCCTA
LOC_Os03g22620
Os.20572.2.S1_at--1123--3271Chr03:13014068..13014092 (25 bp)
CAAAAATCTGTGTTCATCTCTGTTT
LOC_Os03g22620
Target Sequence 
ATATGGCCACCTCTGTTGAGTCCTACATGAAGGAGCACAATGTCACTGGTGAGGAAGCCACGGCTGTGATAAGTAATCTG
GTCGAAGACGCATGGAAAACTATCAATCAAGCACGCTTTGAGCGTTCCTCGCTTGTGCCGGCTGTGAACCGAGTCGCCAA
CTTAGCGATGAGCATAATGTTCTTCTACCAAGGCAGCGAAGACGCCTACACCTTCAACAAGCTCAGCATGAATATCATCA
AGCAGCTGTTCGTCAAGCCTATCCCCATAATCTAGATATTATACTACACTCCATGTGCCAGCAGTGAATTCCTATAGTAA
ACATGAGATGCCTAGATGATCTTGTCATCATGCAACGTCTTTAATTCTTTGTGAGTGTTGAATAATTGTGTGCACGCATA
TAATTAGGTGTTTGTGTCCTCGCAAAAAAGAAAAAAGAAAAAAAAAGTGTTTGTGCTTGCAGTTTGCTGGGGTGTTTTGT
TGTCGTGCGTGGCAAACTGTTTGCCATGACTTGTGTAATTCTCCCTATATTTCAGTTCAAATGGATCAGAAAAGATGCGC
TTGTTGAGGAAGGACAAAAATCTGTGTTCATCTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20572.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis