Browse Element(s) Details


Os.20629.1.S1_x_at

Description gb:BQ906213
DB_XREF= gi:22304991
DB_XREF=L019A03
CLONE=L019A03
TID=Os.20629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1641_C04.25 (OJ1641_C04.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g072806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20629.1.S1_x_at--506--5531NONE
GAAAAACCACGCGTACCATTGTCTT
NONE
Os.20629.1.S1_x_at--510--6671Chr07:3615631..3615655 (25 bp)
GTTGCTTGCGCTTTTTATTGGCTAT
LOC_Os07g07280
Os.20629.1.S1_x_at--855--10411Chr07:3615657..3615681 (25 bp)
TTATGGCTGCCTATTCCAAGACCTG
LOC_Os07g07280
Os.20629.1.S1_x_at--427--1391Chr07:3615675..3615699 (25 bp)
AGACCTGGCTTGATAGCCTGTCGTT
LOC_Os07g07280
Os.20629.1.S1_x_at--947--1611Chr07:3615718..3615742 (25 bp)
AGCTGTCATCCTACCTGTGTATGCT
LOC_Os07g07280
Os.20629.1.S1_x_at--221--9771Chr07:3616146..3616170 (25 bp)
TAAGAGCGGCCTGTCTTGGTTTAGA
LOC_Os07g07280
Os.20629.1.S1_x_at--394--10391NONE
TTTTGTCCCATGGTTGTTTCTTGGA
NONE
Os.20629.1.S1_x_at--820--391NONE
ATCAGTGGACACCTTTAGCTTGTAG
NONE
Os.20629.1.S1_x_at--438--9131NONE
TGCTGTGACCTTGTACACGCATGTA
NONE
Os.20629.1.S1_x_at--465--6971Chr07:3616361..3616386 (25 bp)
GTACCAATGATGCTCGGATGATCCA
LOC_Os07g07280
Os.20629.1.S1_x_at--398--2391NONE
AAACTGCCAAGACCATAACCTGCTG
NONE
Target Sequence 
GAAAAACCACGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATGGCTGCCTATTCCAAG
ACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCAGCTGTCATCCTACCTGTGTATGCTNCAGTGGCTATNCC
AGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTNCGCNAAGGCACTCGAGATTGAGGGCCTGTAAGAGCG
GCCTGTCTTGGTTTAGAGAGAAAGAACCAAGATTAGACACACAGAACAACGAGTTTTTTGTCCCATGGTTGTTTCTTGGA
CAGCGTGGATCAGTGGACACCTTTAGCTTGTAGGGAAGTAGACTAAGGTTGGCAGGAAATTACTCCACTAGAACACCTGG
GGGACCAGATGGAACTTACAGGGTTTTCTTGCTGTGACCTTGTACACGCATGTAATGTACCAATGATGCTCGGATGATCC
ATGGTGGNTCTGAGATAGTTCAGTCCAAACTGCCAAGACCATAACCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20629.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis