Browse Element(s) Details


OsAffx.28322.1.S1_at

Description gb:NM_186476.1
DB_XREF= gi:34900037
GEN=OJ1641_C04.26
TID=OsAffx.28322.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1641_C04.26 (OJ1641_C04.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0729011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28322.1.S1_at--778--1931Chr07:3617533..3617557 (25 bp)
ACGGCAACATCGGTCATGGCGGACA
LOC_Os07g07290
OsAffx.28322.1.S1_at--590--2491Chr07:3617528..3617552 (25 bp)
AACATCGGTCATGGCGGACAAGAGC
LOC_Os07g07290
OsAffx.28322.1.S1_at--720--4251Chr07:3617157..3617181 (25 bp)
CCGTGGCGGGATGACTGCAGGCGAA
LOC_Os07g07290
OsAffx.28322.1.S1_at--9--6191Chr07:3617088..3617112 (25 bp)
GAGGACGACAGCATCCACGACCGCG
LOC_Os07g07290
OsAffx.28322.1.S1_at--464--5651Chr07:3617082..3617106 (25 bp)
GACAGCATCCACGACCGCGAGTGGG
LOC_Os07g07290
OsAffx.28322.1.S1_at--580--8351Chr07:3617008..3617032 (25 bp)
GGCGGCCTCAGAAGACAGCGACGAC
LOC_Os07g07290
OsAffx.28322.1.S1_at--1100--5071Chr07:3616982..3617006 (25 bp)
GCAGCCACGACCACGGGCAAGGGTA
LOC_Os07g07290
OsAffx.28322.1.S1_at--411--4471Chr07:3616933..3616957 (25 bp)
GCCTCGAAAGATAGCGACGGCCGCA
LOC_Os07g07290
OsAffx.28322.1.S1_at--928--4091Chr07:3616929..3616953 (25 bp)
CGAAAGATAGCGACGGCCGCAACCA
LOC_Os07g07290
OsAffx.28322.1.S1_at--195--8411Chr07:3616915..3616939 (25 bp)
GGCCGCAACCACGACCGTGGGAAAG
LOC_Os07g07290
OsAffx.28322.1.S1_at--785--3891Chr07:3616875..3616899 (25 bp)
CGGCCACGGAAGACCGTGAACACAA
LOC_Os07g07290
Target Sequence 
ACGGCAACATCGGTCATGGCGGACAAGAGCGACAGCAGGGGCGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGAAG
CGGCGGCGCGAGCGAGAGTGGTGAGACAGGCACAGGAGATGGCAGCGGCCGCGGTGGACGAGGATGGCCGCCGCGGGCGT
GGATGGCGAGACGGACGTGGGCCACTGCCGCGGAGGACGAGGACGGTGGCGAACATGAACGGGGACGGACGCAAACGAGG
ATGGAGCGATGGCAGCCGTGGCGGGATGACTGCAGGCGAAGACGGTGGCCGCGGAAGACAGCAATGGCGGCGGCCAGGGA
GGACGAGGACGACAGCATCCACGACCGCGAGTGGGGTGCGGGACGGCGGCAGCCAAGGCCGCGGGCGAGGGTGCGGGCGA
CGGCGGCGGCCTCAGAAGACAGCGACGACGGCAGCCACGACCACGGGCAAGGGTACGAGCGGGGGTGGCAGCGGCGGCGG
CCTCGAAAGATAGCGACGGCCGCAACCACGACCGTGGGAAAGGGTGTGGGACGGCGTCGGCCACGGAAGACCGTGAACAC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis