Browse Element(s) Details


Os.14695.1.S1_at

Description gb:AK120608.1
DB_XREF= gi:37990231
TID=Os.14695.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1641_C04.24 (OJ1641_C04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151F13, full insert sequence.
FL= gb:AK120608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0727011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14695.1.S1_at--244--6051Chr07:3609543..3609567 (25 bp)
GAGATACTGAGAACTCTCGCCGGCT
LOC_Os07g07270
Os.14695.1.S1_at--1116--9651Chr07:3609472..3609496 (25 bp)
TCAGCTCTCGGATGGTGGTGACACG
LOC_Os07g07270
Os.14695.1.S1_at--660--1971Chr07:3609400..3609424 (25 bp)
ACTGACCTTGTTTAGCGAGCACCTG
LOC_Os07g07270
Os.14695.1.S1_at--947--4071Chr07:3609385..3609409 (25 bp)
CGAGCACCTGTGTAAATGGCGACAT
LOC_Os07g07270
Os.14695.1.S1_at--1098--6651Chr07:3609323..3609347 (25 bp)
GTTGACTTGGACTTCATCTCATCAC
LOC_Os07g07270
Os.14695.1.S1_at--93--9611Chr07:3609305..3609329 (25 bp)
TCATCACGCTCTTTTTGCATCGTAA
LOC_Os07g07270
Os.14695.1.S1_at--306--4751Chr07:3609257..3609281 (25 bp)
GCTGATTGTATTTGATCCTGTGACC
LOC_Os07g07270
Os.14695.1.S1_at--44--5811Chr07:3609217..3609241 (25 bp)
GACGCTTCCATAAACTCACTACAAA
LOC_Os07g07270
Os.14695.1.S1_at--968--10811Chr07:3609181..3609205 (25 bp)
TTGGGACTTGTTCGAATCAGCTTTC
LOC_Os07g07270
Os.14695.1.S1_at--255--391Chr07:3609166..3609190 (25 bp)
ATCAGCTTTCTTCTGCTAGTAACAG
LOC_Os07g07270
Os.14695.1.S1_at--568--6811Chr07:3609137..3609161 (25 bp)
GTTTTAGCTCTCTTTAGTTTCGACT
LOC_Os07g07270
Target Sequence 
GAGATACTGAGAACTCTCGCCGGCTGCGAAGAGGAGTGCAGCAGCGGCGGCAAGAGCCAGAGCGTGTGGGGTCAGCTCTC
GGATGGTGGTGACACGAGTGGCCGTAGGGTTAGGCCAAGAACCTAAAAGACCCACCACATAACACTGACCTTGTTTAGCG
AGCACCTGTGTAAATGGCGACATCAATATCATCTGTATGTGACAAAGATGAGATCTGATAGTTGACTTGGACTTCATCTC
ATCACGCTCTTTTTGCATCGTAATTGCTATGCTGTTTATAAGTTTAGCTGATTGTATTTGATCCTGTGACCCGTTGCTGC
TGTGCGGACGCTTCCATAAACTCACTACAAAATGGTGATTTTTTGGGACTTGTTCGAATCAGCTTTCTTCTGCTAGTAAC
AGATTTGTTTTAGCTCTCTTTAGTTTCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis