Browse Element(s) Details


Os.47892.1.S1_at

Description gb:AK108281.1
DB_XREF= gi:32993490
TID=Os.47892.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D01, full insert sequence.
FL= gb:AK108281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47892.1.S1_at--639--8151Chr07:3615207..3615231 (25 bp)
GGAACTGGGTTTTTTACTTCTGCAT
LOC_Os07g07280
Os.47892.1.S1_at--477--2571Chr07:3615209..3615232 (24 bp)
AACTGGGTTTTTTACTTCTGCATGC
LOC_Os07g07280
Os.47892.1.S1_at--1015--7671Chr07:3615213..3615612 (25 bp)
GGGTTTTTTACTTCTGCATGCGTAC
LOC_Os07g07280
Os.47892.1.S1_at--990--10371Chr07:3615218..3615617 (25 bp)
TTTTACTTCTGCATGCGTACCATTG
LOC_Os07g07280
Os.47892.1.S1_at--831--2051Chr07:3615222..3615621 (25 bp)
ACTTCTGCATGCGTACCATTGTCTT
LOC_Os07g07280
Os.47892.1.S1_at--642--3891Chr07:3615732..3615756 (25 bp)
CTGTGTATGCTGCAGTGGCTATCCA
LOC_Os07g07280
Os.47892.1.S1_at--788--6911Chr07:3615736..3615760 (25 bp)
GTATGCTGCAGTGGCTATCCAGGAT
LOC_Os07g07280
Os.47892.1.S1_at--776--6491Chr07:3616112..3616136 (25 bp)
GATAGTGCGCAAGGCACTCGAGATT
LOC_Os07g07280
Os.47892.1.S1_at--145--8531Chr07:3616227..3616251 (25 bp)
TGGACAGCGTGATCAGTGACACTTT
LOC_Os07g07280
Os.47892.1.S1_at--446--411Chr07:3616238..3616262 (25 bp)
ATCAGTGACACTTTAGCTTGTAGGG
LOC_Os07g07280
Os.47892.1.S1_at--141--1771Chr07:3616429..3616453 (25 bp)
ACCTGCTGATAATAAGCATTGTGAA
LOC_Os07g07280
Target Sequence 
GGAACTGGGTTTTTTACTTCTGCATGCGTACCATTGTCTTCGCTGGAGGGTTGCTTGCGCTTTTTATTGGCTATGTTATG
GCTGCCTATTCCAAGACCTGGCTTGATAGCCTGTCGTTACTGCCCCTTCTATTTGCANCTGTCATCCTACCTGTGTATGC
TGCAGTGGCTATCCAGGATGCACGACGCTTGGAGAGAGAGAGGGTGGTTTGGATAGTGCGCAAGGCACTCGAGATTGAGG
GCCTGTAAGAGCGGCCTGTCTTGGTTTAGAGAGAAAGAACAAAGATTAGACACACAGAACAACGAGTTTTTTTCCATGTT
GTTTCTTGGACAGCGTGATCAGTGACACTTTAGCTTGTAGGGAAGTAGACTGAGGTTGGCAGGAAATTACTCCACTAGAA
CACTGGGGNNCAAGATGGAACTTACAGGGTTTTCTTGCTGTGACTTGTACAGCATGTAATGTACCAAATGATGCTCGGAT
GATCCATGGTGGGTCTGAGATAGTTCAGTGCAAACTGCAAAGACCATAACCTGCTGATAATAAGCATTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis