Browse Element(s) Details


Os.27647.2.S1_x_at

Description gb:NM_186477.1
DB_XREF= gi:34900039
GEN=OJ1641_C04.27
TID=Os.27647.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1641_C04.27 (OJ1641_C04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1641_C04.27 (OJ1641_C04.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g073007/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27647.2.S1_x_at--43--9791NONE
TAAGTGTCCGGTGACTCCAGATGAC
NONE
Os.27647.2.S1_x_at--768--571Chr07:3620029..3620053 (25 bp)
ATGACCGGGTCGTTGTTGCACAAAC
LOC_Os07g07300
Os.27647.2.S1_x_at--593--9031Chr07:3619965..3619989 (25 bp)
TGCATCGCGGCCTCTTTTTAAGGAT
LOC_Os07g07300
Os.27647.2.S1_x_at--374--811Chr07:3619942..3619966 (25 bp)
ATGGTCCTGAGTACGCCAAGGTCGT
LOC_Os07g07300
Os.27647.2.S1_x_at--816--7011Chr07:3619900..3619924 (25 bp)
GTACTATCGTTCTTGTCGCTTATGC
LOC_Os07g07300
Os.27647.2.S1_x_at--486--7551Chr07:3619793..3619817 (25 bp)
GTGGCCTCTCAGCTATCTGGAATAG
LOC_Os07g07300
Os.27647.2.S1_x_at--756--7691Chr07:3619769..3619793 (25 bp)
GGGTACATTGTTACCGCTTCACTTA
LOC_Os07g07300
Os.27647.2.S1_x_at--585--3491Chr07:3619734..3619758 (25 bp)
CATGGCGGCCTTCATAATGCTGGCA
LOC_Os07g07300
Os.27647.2.S1_x_at--33--3031NONE
AATGCTGGCAGGAATGACGGTGTAC
NONE
Os.27647.2.S1_x_at--350--5951Chr07:3617778..3617802 (25 bp)
GAGCAACGTCAGTGGCTACTGTGGA
NONE
Os.27647.2.S1_x_at--988--9911Chr07:3617762..3617786 (25 bp)
TACTGTGGACAATGGCCGCAGCGGC
NONE
Target Sequence 
TAAGTGTCCGGTGACTCCAGATGACCGGGTCGTTGTTGCACAAACTTTGCAGACAATATTAGCTAGTATTTTACCTTTAT
GTGCTGCATCGCGGCCTCTTTTTAAGGATGGTCCTGAGTACGCCAAGGTCGTGACGTTTGGTTTTCTGGGTACTATCGTT
CTTGTCGCTTATGCTGGGGTGTTTGCCAAGGCGGCCAACAGCAAGGCCGCGTTGAGGCTGGTGGTTTCTGCAGCTATTGC
TGCCATGACATTTGCCGTGGCCTCTCAGCTATCTGGAATAGGGTACATTGTTACCGCTTCACTTACTGGTGCCATCATGG
CGGCCTTCATAATGCTGGCAGGAATGACGGTGTACCTGCGGCGGCTAGGGCGGAAGAGGACGACGGTTGTGGCAGAGGTG
GAAAAGAGCAACGTCAGTGGCTACTGTGGACAATGGCCGCAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27647.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis