Browse Element(s) Details


Os.27399.1.S1_at

Description gb:AK063292.1
DB_XREF= gi:32973310
TID=Os.27399.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1641_C04.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E04, full insert sequence.
FL= gb:AK063292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0726011/11Glutamine-dependent NAD, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein
LOC_Os07g07300Os.27647.1.S1_at9/117+3618411..3629120expressed protein
LOC_Os07g07300Os.27647.2.S1_x_at7/117+3618411..3629120expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27399.1.S1_at--374--2651Chr07:3608434..3608458 (25 bp)
AAGTACTACGCGATAAACCGGCATA
LOC_Os07g07260
Os.27399.1.S1_at--1149--2611Chr07:3608449..3608473 (25 bp)
AACCGGCATAAGATGACTGTCCTGA
LOC_Os07g07260
Os.27399.1.S1_at--757--3851Chr07:3608470..3608493 (24 bp)
CTGACACCATCCTATCATGCGGAGA
LOC_Os07g07260
Os.27399.1.S1_at--333--611Chr07:3608486..3608603 (25 bp)
ATGCGGAGAGCTATTCGCCCGAGGA
LOC_Os07g07260
Os.27399.1.S1_at--766--6451Chr07:3608602..3608626 (25 bp)
GATAACCGGTTCGATCTTCGGCAAT
LOC_Os07g07260
Os.27399.1.S1_at--823--10571Chr07:3608618..3608642 (25 bp)
TTCGGCAATTTCTGTACAACGCAAG
LOC_Os07g07260
Os.27399.1.S1_at--1006--2791Chr07:3608640..3608664 (25 bp)
AAGATGGCCTTATCAATTCCGGAAG
LOC_Os07g07260
Os.27399.1.S1_at--129--7671Chr07:3608787..3608811 (25 bp)
GGGATCTGCCAATCCAAGTGCTGGA
LOC_Os07g07260
Os.27399.1.S1_at--75--3911Chr07:3608807..3608831 (25 bp)
CTGGATCGTGAGAAAGCAACCGCTT
LOC_Os07g07260
Os.27399.1.S1_at--408--6871Chr07:3608840..3608864 (25 bp)
GTTTGGTTTTCTCAAGTCACATCGA
LOC_Os07g07260
Os.27399.1.S1_at--332--8191Chr07:3608987..3609011 (25 bp)
GGAAGCGTCCATAAACCACACACAG
LOC_Os07g07260
Target Sequence 
AAGTACTACGCGATAAACCGGCATAAGATGACTGTCCTGACACCATCCTATCATGCGGAGAGCTATTCGCCCGAGGATAA
CCGGTTCGATCTTCGGCAATTTCTGTACAACGCAAGATGGCCTTATCAATTCCGGAAGATCGATGAGCTTGTGCAAGACA
TGGATAAAGATGGCAAATGGGTGAACTCTACAGAAGGGGAGCTGAGAAGACGCAAGGGCGTTAGATCCGCGGAAGGAGGC
GGAATGGGTGTCGTCGCCGTGGGATCTGCCAATCCAAGTGCTGGATCGTGAGAAAGCAACCGCTTTGCAGGATGTTTGGT
TTTCTCAAGTCACATCGAAGTTTCTCTAATTCACACTTTTATTCAATAATTTCTNTTTTTTTTTGATAAAATCCCTGTGT
GTGGACGGGGATTGAGGTTGTCTCATCCAACCAATGTAAGTGTCCATAACTAATCAAACAGGAAGCGTCCATAAACCACA
CACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis