Browse Element(s) Details


Os.22816.1.S1_at

Description gb:AK109573.1
DB_XREF= gi:32994782
TID=Os.22816.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative snRNP protein (P0039H02.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F03, full insert sequence.
FL= gb:AK109573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g072209/11small nuclear ribonucleoprotein associated protein B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005654cellular_componentnucleoplasm
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0015030cellular_componentCajal body
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22816.1.S1_at--105--2431Chr07:3573580..3573604 (25 bp)
AAAACCCTCCGCAATAGCTTTGCTG
LOC_Os07g07220
Os.22816.1.S1_at--156--4891NONE
GCTTTGCTGGTTGTTCTTGCTATAC
NONE
Os.22816.1.S1_at--586--8791Chr07:3574782..3574806 (25 bp)
TGTTCTTGCTATACCAACTATGGAA
LOC_Os07g07220
Os.22816.1.S1_at--283--851NONE
ATGGAAGATTCACCGGTGCCACCGT
NONE
Os.22816.1.S1_at--609--1211Chr07:3574862..3574886 (25 bp)
AGTTTTCTTGCGGTATCAGCTCAGA
LOC_Os07g07220
Os.22816.1.S1_at--995--3031Chr07:3574898..3574922 (25 bp)
AATCCTTTTATTATCAGTGGAGCAC
LOC_Os07g07220
Os.22816.1.S1_at--949--1091Chr07:3574913..3574937 (25 bp)
AGTGGAGCACTCTTGTTTCTATGCG
LOC_Os07g07220
Os.22816.1.S1_at--33--5691Chr07:3574969..3574993 (25 bp)
GACTTGGATAGCCTGTTTCATCGTG
LOC_Os07g07220
Os.22816.1.S1_at--446--10331Chr07:3574984..3575008 (25 bp)
TTTCATCGTGTGTCCTGATAGCTGT
LOC_Os07g07220
Os.22816.1.S1_at--1069--6471Chr07:3575000..3575024 (25 bp)
GATAGCTGTTGTACTCGACTACTCG
LOC_Os07g07220
Os.22816.1.S1_at--681--4091Chr07:3575015..3575039 (25 bp)
CGACTACTCGTCTTGTGTTTTTTGA
LOC_Os07g07220
Target Sequence 
AAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACT
GTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAG
TGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGT
GTCCTGATAGCTGTTGTACTCGACTACTCGTCTTGTGTTTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis