Browse Element(s) Details


OsAffx.28321.1.S1_x_at

Description tigr:9635.m00663
TID=OsAffx.28321.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0721011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28321.1.S1_x_at--1--1811Chr07:3571981..3572005 (25 bp)
ACCGCGAGCTGCAGGCGATGTGCAA
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--1160--4751Chr07:3571974..3571998 (25 bp)
GCTGCAGGCGATGTGCAAGCGCAAC
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--1105--5731Chr07:3571949..3571973 (25 bp)
GACGGCCATGCCAACATGACCAACG
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--109--3451Chr07:3571753..3571928 (25 bp)
CAGTTGCTCCCCTCGGTGGATGGGA
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--294--9311Chr07:3571746..3571921 (25 bp)
TCCCCTCGGTGGATGGGATCCACAA
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--801--6251Chr07:3571735..3571759 (25 bp)
GATGGGATCCACAAGATCGACACGA
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--350--2812Chr05:23901280..23901299 (20 bp)
AAGATCGACACGACGGCGCTGTGCC
NONE
OsAffx.28321.1.S1_x_at--427--4231Chr07:3571696..3571720 (25 bp)
CCGACGCCGAGCAGGTTGACGATGA
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--10--9011Chr07:3571674..3571698 (25 bp)
TGAAGTCGGCTTTGAAGGCCGCCTC
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--10--8451Chr07:3571571..3571595 (25 bp)
GGCCATCCAGATGGACTTCGAGGAG
LOC_Os07g07210
OsAffx.28321.1.S1_x_at--295--8653Chr03:25337558..25337579 (22 bp)
TGGGCGTGGCGCTGCGTAGTACCAG
NONE
Target Sequence 
ACCGCGAGCTGCAGGCGATGTGCAAGCGCAACGACGGCCATGCCAACATGACCAACGCCACCATGACCGATGCCCTCCAG
TTGCTCCCCTCGGTGGATGGGATCCACAAGATCGACACGACGGCGCTGTGCCTCCCGACGCCGAGCAGGTTGACGATGAA
GTCGGCTTTGAAGGCCGCCTCGGCGGTCGGCGAGGAAGAGCAGCAGCAGCACGGGAGCCCACTCCCCCGTGGCCGCCGCG
TGTCGGTGAAGTCGCTGGAGGCCATCCAGATGGACTTCGAGGAGGGTGAGGACGAGATGAAGCGGGATCGTGAGGAACGG
AACCTGGGCGTGGCGCTGCGTAGTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28321.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis