Browse Element(s) Details


Os.38580.1.S1_at

Description gb:AY332473.1
DB_XREF= gi:33242910
GEN=PK2
TID=Os.38580.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38580 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transmembrane protein kinase (PK2) mRNA, complete cds.
PROD=transmembrane protein kinase
FL= gb:AY332473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g072307/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38580.1.S1_at--729--571Chr07:3585401..3585522 (25 bp)
ATCCATCTGATAGTGTACCGAACGG
LOC_Os07g07230
Os.38580.1.S1_at--353--9951Chr07:3585513..3585537 (25 bp)
TACCGAACGGTGATAAGCTCGACAT
LOC_Os07g07230
Os.38580.1.S1_at--730--5671Chr07:3585533..3585557 (25 bp)
GACATCTTCGATTTCGGCGTGATAC
LOC_Os07g07230
Os.38580.1.S1_at--782--8351Chr07:3585548..3585572 (25 bp)
GGCGTGATACTACTCGAGGTTATCT
LOC_Os07g07230
Os.38580.1.S1_at--973--6152Chr07:3585563..3585587 (25 bp)
GAGGTTATCTCAGGCAGGCCCATCA
LOC_Os07g07230
Os.38580.1.S1_at--1091--9691Chr07:3585585..3585609 (25 bp)
TCACATCCATCTACGAGGTGGAGAT
LOC_Os07g07230
Os.38580.1.S1_at--864--5471Chr07:3585754..3585775 (22 bp)
GAACAGCTGCAATCGGCGCTGACGG
LOC_Os07g07230
Os.38580.1.S1_at--653--9911Chr07:3586051..3586075 (25 bp)
TACTCCATCATAGCCTGCAGGTATC
NONE
Os.38580.1.S1_at--683--9991Chr07:3586061..3586085 (25 bp)
TAGCCTGCAGGTATCTATCACCAAA
NONE
Os.38580.1.S1_at--509--2371Chr07:3586092..3586116 (25 bp)
AAACCTTGCACTTTGAGCATCTGAA
NONE
Os.38580.1.S1_at--1024--5471Chr07:3586114..3586138 (25 bp)
GAACTATCATGCTCTGATCATCCAT
NONE
Target Sequence 
ATCCATCTGATAGTGTACCGAACGGTGATAAGCTCGACATCTTCGATTTCGGCGTGATACTACTCGAGGTTATCTCAGGC
AGGCCCATCACATCCATCTACGAGGTGGAGATAATGAAAGAACAGCTGCAATCGGCGCTGACGGCGGAGGGGACGGCGAA
GAGGAGGAGCTTTGTGGACCCGGCGGTGAGCAAGGGGTGCTCCGACGAGTCGGTGAAGACGGTGATGGAGATCTGCCTGA
GGTGCCTGGCCAAGGAGGCGGTGCAGAGGCCGTCGGTGGAGGACGTGCTGTGGAACCTGCAGTTCGCCGCGCAGGTGCAG
GATGACTGGAGAGGGGACTCCCGGAGCAGCGAGGAGTCGCCNCTGTCGCCGTCGCAGATCCCCAGAGACTTAGANNANNA
CCNNNNNTNNNNNNNNANNNNNANNNNNNNNGNNGNTACTCCATCATAGCCTGCAGGTATCTATCACCAAACAAACCAAA
CCTTGCACTTTGAGCATCTGAACTATCATGCTCTGATCATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis