Browse Element(s) Details


Os.47367.1.S1_x_at

Description gb:NM_186465.1
DB_XREF= gi:34900015
GEN=P0039H02.26
TID=Os.47367.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.26 (P0039H02.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0039H02.26 (P0039H02.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0719410/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47367.1.S1_x_at--516--7951Chr07:3560020..3560044 (25 bp)
GGATCTCCAAACCTGGCTCAGAAAT
LOC_Os07g07194
Os.47367.1.S1_x_at--432--1411Chr07:3560001..3560025 (25 bp)
AGAAATCGGGCCTCATCTCAACACT
LOC_Os07g07194
Os.47367.1.S1_x_at--141--6271Chr07:3559924..3559948 (25 bp)
GATGTGAACATCAACTCGGCAGTGT
LOC_Os07g07194
Os.47367.1.S1_x_at--323--2531Chr07:3559912..3559936 (25 bp)
AACTCGGCAGTGTACCCTGGTGGAC
LOC_Os07g07194
Os.47367.1.S1_x_at--992--1111Chr07:3559877..3559901 (25 bp)
AGTGCAGACCCCAAAACTTCTCAAG
LOC_Os07g07194
Os.47367.1.S1_x_at--1104--2511Chr07:3559863..3559887 (25 bp)
AACTTCTCAAGTTTGTGGATCCAAC
LOC_Os07g07194
Os.47367.1.S1_x_at--76--471Chr07:3559815..3559839 (25 bp)
ATCTGCCAGGTTATTGGGTGGTCTC
LOC_Os07g07194
Os.47367.1.S1_x_at--341--9531Chr07:3559794..3559818 (25 bp)
TCTCAGGTGCGAAGCTGCAGCTCGA
LOC_Os07g07194
Os.47367.1.S1_x_at--604--5331Chr07:3559745..3559769 (25 bp)
GAAGTACTCGCTCTTGACAGCAATG
LOC_Os07g07194
Os.47367.1.S1_x_at--819--8171Chr07:3559607..3559631 (25 bp)
GGAACTCGAATGCTCAATCTAGGAT
LOC_Os07g07194
Os.47367.1.S1_x_at--538--3711NONE
CTAGCTGGAAGCCTATGTTGTATAC
NONE
Target Sequence 
GGATCTCCAAACCTGGCTCAGAAATCGGGCCTCATCTCAACACTCATCAGCACACATTTNTCCACAGCAGCTCAANAGCC
CGCGCCTCGCCCTGCTGATGTGAACATCAACTCGGCAGTGTACCCTGGTGGACCCCCTGTTCCAGTGCAGACCCCAAAAC
TTCTCAAGTTTGTGGATCCAACAGAGATGATGCGTGGACCGCAGGATCTGCCAGGTTATTGGGTGGTCTCAGGTGCGAAG
CTGCAGCTCGAGAGGGGCAAGATCTCGCTGCGGGTGAAGTACTCGCTCTTGACAGCAATGTTGCCTGACGACNATGAGTT
TGCGTTCGATGAAGAGTTTTAGAACCATGAAACCGAGCGAAGAAAAGAAACCCACCTCATTTTGTTTTTATCATTTATGT
GCAGCTAACAGCAGGAACTCGAATGCTCAATCTAGGATTTTCGTAGCATTTGTAAGTGAACTAGCTGGAAGCCTATGTTG
TATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47367.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis